chr19 : 20,261,348 – 20,261,810
462 bp 44 TFs 8 linked genes
This 462 bp open chromatin element is linked to 8 target genes and is bound by 44 transcription factors.
Linked Genes
8 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000213985 3.6 kb Proximal Proximity
ENSG00000267383 23.1 kb Distal Multiome
ZNF486 94.4 kb Distal Multiome
ENSG00000291130 163.4 kb Distal Multiome
ZNF90 183.6 kb Distal Multiome
ZNF682 222.1 kb Distal Multiome
ZNF430 759.1 kb Distal Multiome+HiCAR
ZNF431 880.5 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:20,256,348 – 20,266,810
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
CREB1 1 dataset
Motif DE_72h DE_72h-CREB1_MA0018.5 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 259 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 462 bp overlap
ChIP DE DE-FOXA2-2 428 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 462 bp overlap
ChIP DE DE-GATA4-2 462 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 462 bp overlap
ChIP DE DE-GATA6-2 462 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 462 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 462 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 462 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 429 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
HOXB13 1 dataset
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
HOXC13 1 dataset
Motif DE_60h DE_60h-HOXC13_MA0907.2 9 bp overlap
Irf1 1 dataset
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
JUN 5 datasets
Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 312 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 330 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 450 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 273 bp overlap
KLF1 1 dataset
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF13 1 dataset
Motif DE_60h DE_60h-KLF13_MA0657.2 17 bp overlap
KLF2 1 dataset
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
MAFF 1 dataset
Motif DE_72h DE_72h-MAFF_MA0495.4 11 bp overlap
MAFK 1 dataset
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 1 dataset
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
Mafb 1 dataset
Motif DE_72h DE_72h-Mafb_MA0117.3 11 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 246 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 183 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 188 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 180 bp overlap
NR2F1 1 dataset
Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap
NRL 1 dataset
Motif DE_72h DE_72h-NRL_MA0842.3 12 bp overlap
Nfat5 1 dataset
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Nr2F6 1 dataset
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 289 bp overlap
Rarg 1 dataset
Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 279 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 399 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 420 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 331 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 434 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
SREBF1 1 dataset
Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap
TBP 1 dataset
Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap
TEAD1 2 datasets
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 319 bp overlap
TEAD2 1 dataset
Motif DE_72h DE_72h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap
TEAD4 2 datasets
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 249 bp overlap
THAP1 1 dataset
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
VEZF1 1 dataset
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
Wt1 1 dataset
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Yy1 1 dataset
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZBTB26 1 dataset
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZNF684 1 dataset
Motif DE_72h DE_72h-ZNF684_MA1600.2 14 bp overlap
ZNF707 1 dataset
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
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