chr18 : 39,229,920 – 39,230,677

757 bp 55 TFs 0 linked genes

This 757 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

55 transcription factors

CTCF 1 dataset

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 274 bp overlap

Crx 1 dataset

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

DPRX 1 dataset

Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap

DUX4 1 dataset

Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap

Dmbx1 1 dataset

Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap

Dux 1 dataset

Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 362 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_48h DE_48h-ETV5FOXO1_MA1947.2 10 bp overlap

FOXA1 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 218 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 746 bp overlap

ChIP DE DE-FOXA2-2 572 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 251 bp overlap

GATA1 1 dataset

Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap

GATA4 5 datasets

ChIP DE DE-GATA4-1 611 bp overlap

ChIP DE DE-GATA4-2 656 bp overlap

ChIP foregut GSE117136.GATA4.foregut 470 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 675 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 470 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 661 bp overlap

ChIP DE DE-GATA6-2 752 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 325 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 614 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 473 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 322 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 504 bp overlap

ChIP foregut GSE117136.GATA6.foregut 422 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 520 bp overlap

GLIS2 1 dataset

Motif DE_48h DE_48h-GLIS2_MA0736.1 14 bp overlap

GLIS3 1 dataset

Motif DE_48h DE_48h-GLIS3_MA0737.1 14 bp overlap

GSC 1 dataset

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Hnf1A 1 dataset

Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap

KLF4 2 datasets

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 150 bp overlap

ChIP HAP1 GSE130417.KLF4.HAP1 368 bp overlap

Lef1 1 dataset

Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap

MEIS1 1 dataset

Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap

NANOG 1 dataset

ChIP hESC GSE18292.NANOG.hESC 137 bp overlap

NEUROD1 1 dataset

ChIP D283-Med GSE92582.NEUROD1.D283-Med 274 bp overlap

OTX1 1 dataset

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap

PDX1 2 datasets

ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap

ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 246 bp overlap

PITX1 1 dataset

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap

PRDM9 1 dataset

Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap

Pgr 1 dataset

Motif DE_48h DE_48h-Pgr_MA2323.1 17 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 589 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 424 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 657 bp overlap

RHOXF1 1 dataset

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 184 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 215 bp overlap

SMAD2-3 2 datasets

ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 254 bp overlap

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 559 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 303 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 313 bp overlap

SMAD3 1 dataset

ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap

SMARCC1 1 dataset

ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 242 bp overlap

SOX10 1 dataset

Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap

SOX15 1 dataset

Motif DE_48h DE_48h-SOX15_MA1152.2 7 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 350 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 463 bp overlap

SOX2 2 datasets

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 322 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 188 bp overlap

SP5 1 dataset

Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 261 bp overlap

TCF7 1 dataset

Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap

TCF7L2 1 dataset

Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap

TP53 1 dataset

ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 59 bp overlap

ZNF282 1 dataset

Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap

ZNF320 1 dataset

Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap

ZNF675 1 dataset

Motif DE_48h DE_48h-ZNF675_MA1714.2 19 bp overlap

ZNF85 1 dataset

Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap

ZSCAN16 1 dataset

Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap