chr18 : 26,566,925 – 26,567,451
526 bp 54 TFs 1 linked gene
This 526 bp open chromatin element is linked to ENSG00000275805 and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000275805 8.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:26,561,925 – 26,572,451
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CTCF 109 datasets
ChIP A-549 ENCSR000AUE.CTCF.A-549 213 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 370 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 176 bp overlap
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
ChIP DND-41 ENCFF913MRA 317 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 185 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 194 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 265 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 188 bp overlap
ChIP GM12864 ENCFF357DQE 285 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 108 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 99 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 134 bp overlap
ChIP GM23338 ENCFF531QOI 425 bp overlap
ChIP GM23338 ENCFF531QOI 299 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 257 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 217 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 253 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 306 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 206 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 132 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 284 bp overlap
ChIP HCT116 ENCFF003KHP 421 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 70 bp overlap
ChIP HEC-1-B_F-mutation GSE140868.CTCF.HEC-1-B_F-mutation 115 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.CTCF.HEC-1-B_FFRR-insertion 108 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 133 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 272 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 119 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 371 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 322 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 114 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 116 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 121 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 279 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 381 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 330 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 96 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 237 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 111 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 294 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 257 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 139 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 137 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 297 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 115 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 163 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 185 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 169 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 235 bp overlap
ChIP Panc1 ENCFF056JQX 526 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 435 bp overlap
ChIP RWPE2 ENCFF911IEE 526 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 431 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 345 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 161 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 155 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 185 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 131 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 138 bp overlap
ChIP brain ENCFF685VRG 526 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 319 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP endodermal cell ENCFF471YCZ 280 bp overlap
ChIP endodermal cell ENCFF471YCZ 372 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 305 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 163 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 331 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 173 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 182 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 238 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 375 bp overlap
ChIP esophagus squamous epithelium ENCFF700BXI 389 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 226 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 293 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 388 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 252 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 181 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 382 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 306 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 224 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 134 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 159 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 167 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 255 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 180 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 153 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 285 bp overlap
ChIP keratinocyte ENCFF667ULX 305 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 390 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 236 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 205 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 265 bp overlap
ChIP neural progenitor cell ENCFF581WPG 415 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 256 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 257 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 174 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 179 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 182 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 383 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 444 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 299 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 141 bp overlap
ESR1 8 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 207 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 192 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 200 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 203 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 182 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 164 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 186 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 204 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 326 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 248 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 199 bp overlap
FOXA1 11 datasets
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 211 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 165 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 175 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 267 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 192 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 229 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 248 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 299 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 155 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 145 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 267 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 477 bp overlap
ChIP DE DE-FOXA2-2 467 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 188 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 345 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 209 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 478 bp overlap
ChIP DE DE-GATA4-2 466 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 420 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 404 bp overlap
ChIP DE DE-GATA6-2 415 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 402 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 421 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 263 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 446 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 449 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 428 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 410 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA1639.2 9 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 148 bp overlap
NR1I3 1 dataset
Motif DE_36h DE_36h-NR1I3_MA1534.2 8 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 349 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 308 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 322 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 266 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 84 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm4 1 dataset
Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap
RAD21 26 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 266 bp overlap
ChIP A549 ENCFF047SFC 251 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 107 bp overlap
ChIP H1 ENCFF698EWO 63 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 223 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 268 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 143 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 202 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.RAD21.HEC-1-B_F-insertion 104 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.RAD21.HEC-1-B_R1-insertion 121 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 127 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 315 bp overlap
ChIP HeLa-S3 ENCFF775CHI 231 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 165 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 158 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 185 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 176 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 209 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 447 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 160 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 200 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 147 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 153 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 224 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 227 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 298 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15690 GSE132290.SMARCA4.A-549_AG15690 274 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 175 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 512 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 301 bp overlap
SOX21 1 dataset
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
STAG1 5 datasets
ChIP HMEC-1 GSE101921.STAG1.HMEC-1 138 bp overlap
ChIP HeLa GSE126990.STAG1.HeLa 380 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 380 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 149 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 165 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 201 bp overlap
STAT3 3 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 167 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 107 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 180 bp overlap
Sox1 1 dataset
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 241 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 248 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 292 bp overlap
Vdr 1 dataset
Motif DE_36h DE_36h-Vdr_MA0693.4 7 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 104 bp overlap
ZKSCAN1 1 dataset
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF282 1 dataset
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 167 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 230 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 130 bp overlap
ZNF416 1 dataset
Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap
Huangfu Lab · Publications · Resources · Contact