Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

48 transcription factors

ASCL1 1 dataset

Motif DE_60h DE_60h-ASCL1_MA1100.3 8 bp overlap

Ahr::Arnt 1 dataset

Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap

Ascl2 1 dataset

Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 1 dataset

Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap

Bhlha15 1 dataset

Motif DE_60h DE_60h-Bhlha15_MA1472.3 8 bp overlap

CREM 1 dataset

ChIP GM12878 ENCSR839XZU.CREM.GM12878 86 bp overlap

CRX 2 datasets

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 222 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 220 bp overlap

CTCF 8 datasets

ChIP U-937 ERP008568.CTCF.U-937 176 bp overlap

ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 58 bp overlap

ChIP gastroesophageal sphincter ENCFF569YIT 126 bp overlap

ChIP gastroesophageal sphincter ENCFF918KPI 71 bp overlap

ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 80 bp overlap

ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 70 bp overlap

ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 70 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 150 bp overlap

Cebpa 4 datasets

ChIP BLaER1 ENCFF031ISE 421 bp overlap

ChIP BLaER1 ENCFF093OYK 285 bp overlap

ChIP BLaER1 ENCFF274GAT 508 bp overlap

ChIP BLaER1 ENCFF364PUR 251 bp overlap

EBF1 1 dataset

Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap

EED 1 dataset

ChIP GM12878 ENCFF266FYW 223 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 303 bp overlap

EP300 3 datasets

ChIP gastroesophageal sphincter ENCFF211FPL 51 bp overlap

ChIP upper lobe of left lung ENCFF024QBJ 261 bp overlap

ChIP upper lobe of left lung ENCFF720RAR 241 bp overlap

ESR1 1 dataset

ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 210 bp overlap

ETV2::FIGLA 1 dataset

Motif DE_60h DE_60h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV5::HOXA2 1 dataset

Motif DE_60h DE_60h-ETV5HOXA2_MA1948.2 12 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 406 bp overlap

ChIP DE DE-FOXA2-2 453 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 469 bp overlap

ChIP DE DE-GATA4-2 491 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 397 bp overlap

ChIP DE DE-GATA6-2 474 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 390 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 332 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 409 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 417 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 425 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 346 bp overlap

MEF2D 2 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 156 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 129 bp overlap

MSC 1 dataset

Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap

MYC 1 dataset

ChIP NB69 GSE138295.MYC.NB69 146 bp overlap

MYCN 3 datasets

ChIP BE2C GSE80151.MYCN.BE2C 71 bp overlap

ChIP COG-N-415 GSE138295.MYCN.COG-N-415 195 bp overlap

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 150 bp overlap

MYF5 1 dataset

Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap

MYOD1 1 dataset

Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap

MYOG 1 dataset

Motif DE_60h DE_60h-MYOG_MA0500.3 8 bp overlap

NHLH1 1 dataset

Motif DE_60h DE_60h-NHLH1_MA0048.3 9 bp overlap

Neurod2 1 dataset

Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap

Olig2 1 dataset

Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap

PAX3 1 dataset

Motif DE_60h DE_60h-PAX3_MA1546.2 14 bp overlap

POLR2A 6 datasets

ChIP esophagus muscularis mucosa ENCFF759BBR 92 bp overlap

ChIP esophagus muscularis mucosa ENCFF791ZXN 179 bp overlap

ChIP sigmoid colon ENCFF748YVT 139 bp overlap

ChIP stomach ENCFF278MYS 61 bp overlap

ChIP upper lobe of left lung ENCFF199JUI 297 bp overlap

ChIP upper lobe of left lung ENCFF199JUI 405 bp overlap

Ptf1A 1 dataset

Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap

RAD21 1 dataset

ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap

RBPJ 1 dataset

Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap

RELA 3 datasets

ChIP 786-O GSE86092.RELA.786-O 181 bp overlap

ChIP HDF_DMSO GSE77225.RELA.HDF_DMSO 147 bp overlap

ChIP HDF_NUTLIN GSE77225.RELA.HDF_NUTLIN 161 bp overlap

SCRT2 1 dataset

Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 481 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 340 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 260 bp overlap

SMAD3 1 dataset

ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 541 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 478 bp overlap

SP5 1 dataset

Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap

TBX5 1 dataset

Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap

Tcf12 1 dataset

Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap

Tcf21 1 dataset

Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap

Twist2 1 dataset

Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap

ZBTB18 1 dataset

Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap

ZNF257 1 dataset

ChIP HEK293T GSE78099.ZNF257.HEK293T 90 bp overlap

Gene	Expression	Dist. to TSS	Distance	Link type
TTC39C		75.2 kb	Distal	Multiome
CABYR		199.9 kb	Distal	Multiome

Genome Browser