chr17 : 54,361,119 54,361,606
487 bp 42 TFs 0 linked genes
This 487 bp open chromatin element has no linked target genes and is bound by 42 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:54,356,119 – 54,366,606
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Dmbx1 1 dataset
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 347 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 346 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 487 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 487 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 487 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 452 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 487 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
GLIS1 1 dataset
Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap
GLIS3 2 datasets
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 487 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 410 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 456 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 279 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 445 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 223 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCFF065NZG 216 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 349 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 187 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 462 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 338 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 369 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 391 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 430 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 487 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 482 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 344 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 271 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 113 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 341 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 471 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 329 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 172 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 313 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 221 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 414 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap