chr17 : 43,396,555 43,396,987
432 bp 27 TFs 10 linked genes
This 432 bp open chromatin element is linked to 10 target genes and is bound by 27 transcription factors.
Linked Genes
10 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ARL4D 2.0 kb Proximal Proximity
LINC00910 8.0 kb Proximal Proximity
ENSG00000288909 8.2 kb Proximal Proximity
DHX8 87.2 kb Distal Multiome+HiCAR
ETV4 149.6 kb Distal Multiome
TMEM106A 184.9 kb Distal Multiome
NBR1 226.3 kb Distal Multiome
ENSG00000267002 226.4 kb Distal Multiome
NBR2 271.1 kb Distal Multiome
BRCA1 271.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:43,391,555 – 43,401,987
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 266 bp overlap
CCAR2 2 datasets
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 234 bp overlap
ChIP Hep-G2 GSE120104.CCAR2.Hep-G2 175 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 120 bp overlap
ChIP BLaER1 ENCFF335XTP 255 bp overlap
ChIP BLaER1 ENCFF364PUR 230 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 334 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 432 bp overlap
ChIP DE DE-FOXA2-2 66 bp overlap
ChIP DE DE-FOXA2-2 289 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 432 bp overlap
ChIP DE DE-GATA4-2 432 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 432 bp overlap
ChIP DE DE-GATA6-2 432 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 432 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 432 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 432 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 432 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 432 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 432 bp overlap
HNRNPK 1 dataset
ChIP HepG2 ENCFF493GNS 83 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 85 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 190 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 316 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 243 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 220 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 250 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 264 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 161 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 432 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 300 bp overlap
POLR2A 1 dataset
ChIP upper lobe of left lung ENCFF199JUI 275 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 220 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 432 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 432 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 432 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 432 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 432 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 432 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 432 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 432 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 211 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 107 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 385 bp overlap
SPI1 2 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 119 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 129 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 287 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 205 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 296 bp overlap
ZGPAT 1 dataset
ChIP HepG2 ENCFF055YSO 76 bp overlap
ZMYM3 2 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 89 bp overlap
ChIP K562 ENCFF361LXT 126 bp overlap
ZNF528 2 datasets
ChIP HEK293 GSE76494.ZNF528.HEK293 271 bp overlap
ChIP HEK293T GSE78099.ZNF528.HEK293T 258 bp overlap