chr17 : 19,455,896 – 19,456,558
662 bp 43 TFs 8 linked genes
This 662 bp open chromatin element is linked to 8 target genes and is bound by 43 transcription factors.
Linked Genes
8 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000235979 141 bp At TSS Multiome
RPS2P46 9.0 kb Proximal Proximity
MFAP4 69.0 kb Distal Multiome
SLC47A1 77.7 kb Distal Multiome
MAPK7 78.4 kb Distal Multiome
B9D1 93.1 kb Distal Multiome
ALDH3A2 192.6 kb Distal Multiome
EPN2 218.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:19,450,896 – 19,461,558
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 77 bp overlap
ChIP BLaER1 ENCFF364PUR 123 bp overlap
Dux 1 dataset
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
ERF::FOXI1 1 dataset
Motif DE_48h DE_48h-ERFFOXI1_MA1935.2 10 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_48h DE_48h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_24h DE_24h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_48h DE_48h-ETV5FOXO1_MA1947.2 10 bp overlap
FOS 2 datasets
Motif DE_24h DE_24h-FOS_MA0476.2 8 bp overlap
Motif DE_48h DE_48h-FOS_MA0476.2 8 bp overlap
FOSL1::JUND 2 datasets
Motif DE_24h DE_24h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_48h DE_48h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 2 datasets
Motif DE_24h DE_24h-FOSL2_MA0478.2 10 bp overlap
Motif DE_48h DE_48h-FOSL2_MA0478.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 550 bp overlap
ChIP DE DE-FOXA2-2 650 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 162 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 421 bp overlap
ChIP DE DE-GATA4-2 597 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 375 bp overlap
ChIP DE DE-GATA6-2 623 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 558 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 564 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 662 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 419 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 561 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 449 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 346 bp overlap
IKZF1 1 dataset
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 545 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 558 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 460 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 440 bp overlap
Jun 2 datasets
Motif DE_24h DE_24h-Jun_MA0489.3 8 bp overlap
Motif DE_48h DE_48h-Jun_MA0489.3 8 bp overlap
KLF1 2 datasets
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
KLF14 2 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
KLF2 2 datasets
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
KLF9 2 datasets
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
MAFF 1 dataset
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
MYB 2 datasets
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
MZF1 1 dataset
Motif DE_48h DE_48h-MZF1_MA0056.3 8 bp overlap
Mafb 1 dataset
Motif DE_48h DE_48h-Mafb_MA0117.3 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 191 bp overlap
NFIA 2 datasets
Motif DE_24h DE_24h-NFIA_MA0670.2 6 bp overlap
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_24h DE_24h-NFIX_MA0671.2 6 bp overlap
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NFYA 1 dataset
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
NRL 1 dataset
Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap
Nr2e3 1 dataset
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
PBX1 1 dataset
Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap
Plagl1 2 datasets
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Motif DE_48h DE_48h-Plagl1_MA1615.2 8 bp overlap
RBPJ 2 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 281 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 396 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 584 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 624 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 662 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 662 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 582 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 659 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 545 bp overlap
SPDEF 1 dataset
Motif DE_48h DE_48h-SPDEF_MA0686.2 10 bp overlap
SPIC 1 dataset
Motif DE_48h DE_48h-SPIC_MA0687.2 13 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
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