chr17 : 5,711,154 5,711,693
539 bp 46 TFs 7 linked genes
This 539 bp open chromatin element is linked to 7 target genes and is bound by 46 transcription factors.
Linked Genes
7 genes
Link type
Gene Expression Dist. to TSS Distance Link type
MIS12 224.9 kb Distal Multiome
DERL2 225.3 kb Distal Multiome
DHX33 242.6 kb Distal Multiome
C1QBP 272.3 kb Distal Multiome
RPAIN 291.3 kb Distal Multiome
NUP88 291.8 kb Distal Multiome
PIMREG 733.0 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:5,706,154 – 5,716,693
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 309 bp overlap
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 184 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 450 bp overlap
EZH2 2 datasets
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 211 bp overlap
ChIP neural progenitor cell ENCFF018MKA 392 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 539 bp overlap
ChIP DE DE-FOXA2-2 539 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 539 bp overlap
ChIP DE DE-GATA4-2 539 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 539 bp overlap
ChIP DE DE-GATA6-2 539 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 539 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 539 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 539 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 539 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 539 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 539 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 539 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HOXB4 1 dataset
Motif DE_72h DE_72h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_72h DE_72h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_72h DE_72h-HOXC10_MA0905.2 9 bp overlap
HOXC13 1 dataset
Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap
HOXC4 1 dataset
Motif DE_72h DE_72h-HOXC4_MA1504.2 6 bp overlap
HOXD12 1 dataset
Motif DE_72h DE_72h-HOXD12_MA0873.2 10 bp overlap
HOXD4 1 dataset
Motif DE_72h DE_72h-HOXD4_MA1507.2 6 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
Hoxa11 1 dataset
Motif DE_72h DE_72h-Hoxa11_MA0911.2 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 266 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 322 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 399 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 358 bp overlap
Lef1 1 dataset
Motif DE_72h DE_72h-Lef1_MA0768.3 8 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
NKX6-1 1 dataset
Motif DE_72h DE_72h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_72h DE_72h-NKX6-3_MA1530.2 8 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU6F1 1 dataset
Motif DE_72h DE_72h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_72h DE_72h-POU6F2_MA0793.2 9 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 226 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 539 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 539 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 539 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 539 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 539 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 539 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 539 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 368 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 539 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 276 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 263 bp overlap
TCF7 1 dataset
Motif DE_72h DE_72h-TCF7_MA0769.3 7 bp overlap
ZBTB24 1 dataset
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZNF331 1 dataset
Motif DE_72h DE_72h-ZNF331_MA1726.2 10 bp overlap