Predicted to enable zinc ion binding activity. Acts upstream of or within protein import into nucleus and response to UV. Located in PML body; cytoplasm; and fibrillar center. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for RPAIN. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RPAIN upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RPAIN, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr17:5,191,578–5,192,305 | 228.2 kb | Distal (>10kb) Multiome | 771 | |
| chr17:5,281,614–5,283,116 | 137.9 kb | Distal (>10kb) Multiome | 705 | |
| chr17:5,419,157–5,420,471 | 325 bp | At TSS Multiome | 891 | |
| chr17:5,438,801–5,439,554 | 19.0 kb | Distal (>10kb) Multiome | 889 | |
| chr17:5,468,372–5,469,379 | 48.8 kb | Distal (>10kb) Multiome | 890 | |
| chr17:5,485,725–5,487,042 | 66.3 kb | Distal (>10kb) Multiome | 951 | |
| chr17:5,500,534–5,501,338 | 80.9 kb | Distal (>10kb) Multiome | 489 | |
| chr17:5,711,154–5,711,693 | 291.3 kb | Distal (>10kb) Multiome | 46 |
Genomic view of the RPAIN locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.