chr15 : 94,126,833 – 94,127,772
939 bp 42 TFs 3 linked genes
This 939 bp open chromatin element is linked to MCTP2, ENSG00000257060, and RGMA and is bound by 42 transcription factors.
Linked Genes
3 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MCTP2 104.3 kb Distal Multiome
ENSG00000257060 1037.9 kb Distal Multiome+HiCAR
RGMA 1038.0 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:94,121,833 – 94,132,772
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ARNT::HIF1A 1 dataset
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
ASCL1 2 datasets
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 192 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 154 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BHLHE22 1 dataset
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
CDK9 1 dataset
ChIP HEK293T_SIJMJD6 GSE51633.CDK9.HEK293T_SIJMJD6 158 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 428 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 350 bp overlap
ChIP neural cell ENCFF442QNK 517 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 223 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 736 bp overlap
ChIP DE DE-FOXA2-2 700 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 698 bp overlap
ChIP DE DE-GATA4-2 855 bp overlap
ChIP G296S GSE85628.GATA4.G296S 237 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 237 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 424 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 228 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 173 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 323 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 712 bp overlap
ChIP DE DE-GATA6-2 787 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 352 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 573 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 431 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 785 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 666 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 474 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 517 bp overlap
HAND2 2 datasets
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
LIN54 1 dataset
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
MEIS1 5 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MXI1 2 datasets
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MYB 3 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYC 1 dataset
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 459 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 326 bp overlap
Neurod2 1 dataset
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 406 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 176 bp overlap
PKNOX2 2 datasets
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 112 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 361 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 784 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 596 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 368 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 481 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 879 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 829 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 317 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 381 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 248 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 529 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 330 bp overlap
SREBF1 2 datasets
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Motif DE_60h DE_60h-SREBF1_MA0829.3 10 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 489 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 489 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 194 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 616 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 317 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 327 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 175 bp overlap
TFAP4 2 datasets
Motif DE_48h DE_48h-TFAP4_MA1570.1 10 bp overlap
Motif DE_60h DE_60h-TFAP4_MA1570.1 10 bp overlap
TGIF2 2 datasets
Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
TGIF2LY 2 datasets
Motif DE_48h DE_48h-TGIF2LY_MA1572.1 12 bp overlap
Motif DE_60h DE_60h-TGIF2LY_MA1572.1 12 bp overlap
Tcf12 1 dataset
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
USF1 2 datasets
Motif DE_48h DE_48h-USF1_MA0093.4 10 bp overlap
Motif DE_60h DE_60h-USF1_MA0093.4 10 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 159 bp overlap
ZNF331 2 datasets
Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
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