chr14 : 47,794,805 47,795,360
555 bp 28 TFs 1 linked gene
This 555 bp open chromatin element is linked to LINC00648 and is bound by 28 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00648 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:47,789,805 – 47,800,360
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 328 bp overlap
BRD2 4 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 240 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA_JQ1 281 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 203 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 282 bp overlap
BRD4 7 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 168 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 205 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 262 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 262 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 285 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 143 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 179 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 199 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 215 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 88 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 417 bp overlap
FOXA1 12 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 278 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 307 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 195 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 236 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 200 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 237 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 184 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 242 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 238 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 173 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 159 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 196 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 413 bp overlap
ChIP DE DE-FOXA2-2 395 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 185 bp overlap
FOXK2 1 dataset
ChIP HEK293T ENCFF745GCJ 397 bp overlap
KMT2A 3 datasets
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 265 bp overlap
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 160 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 105 bp overlap
KMT2B 1 dataset
ChIP HEK293T_C-term GSE90762.KMT2B.HEK293T_C-term 153 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 529 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 210 bp overlap
MYB 1 dataset
ChIP PF-382 GSE94000.MYB.PF-382 199 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 260 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 252 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 352 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 224 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 189 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 136 bp overlap
TEAD4 1 dataset
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 172 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 272 bp overlap
YY1 4 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 347 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 321 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 125 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 156 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 260 bp overlap