chr1 : 224,607,128 – 224,607,819
691 bp 42 TFs 1 linked gene
This 691 bp open chromatin element is linked to CNIH3-AS2 and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CNIH3-AS2 8.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:224,602,128 – 224,612,819
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 180 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 95 bp overlap
CEBPA 2 datasets
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 58 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 76 bp overlap
CEBPB 2 datasets
ChIP K562 ENCFF584CTB 121 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 53 bp overlap
CEBPG 3 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 86 bp overlap
ChIP K-562 ENCSR620VIC.CEBPG.K-562 62 bp overlap
ChIP K562 ENCFF783ADE 137 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 597 bp overlap
Cebpa 18 datasets
ChIP BLaER1 ENCFF031ISE 115 bp overlap
ChIP BLaER1 ENCFF093OYK 99 bp overlap
ChIP BLaER1 ENCFF140EYR 96 bp overlap
ChIP BLaER1 ENCFF205PMS 98 bp overlap
ChIP BLaER1 ENCFF250ODG 79 bp overlap
ChIP BLaER1 ENCFF262VBH 126 bp overlap
ChIP BLaER1 ENCFF274GAT 88 bp overlap
ChIP BLaER1 ENCFF335XTP 91 bp overlap
ChIP BLaER1 ENCFF364PUR 92 bp overlap
ChIP BLaER1 ENCFF374ODN 78 bp overlap
ChIP BLaER1 ENCFF399AYC 111 bp overlap
ChIP BLaER1 ENCFF419EBE 110 bp overlap
ChIP BLaER1 ENCFF460KDD 119 bp overlap
ChIP BLaER1 ENCFF508JZF 82 bp overlap
ChIP BLaER1 ENCFF680YXW 51 bp overlap
ChIP BLaER1 ENCFF844FIP 118 bp overlap
ChIP BLaER1 ENCFF896HSY 114 bp overlap
ChIP BLaER1 ENCFF952XLX 101 bp overlap
DUX4 1 dataset
Motif DE_24h DE_24h-DUX4_MA0468.1 11 bp overlap
FOXA1 27 datasets
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 110 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 221 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 119 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 108 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 59 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 137 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 120 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 101 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 72 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 114 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 131 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 62 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 104 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 80 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 51 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 134 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 136 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 56 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 98 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 107 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 128 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 137 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 140 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 55 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 192 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 370 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 151 bp overlap
FOXA2 1 dataset
ChIP PANC-1 GSE119930.FOXA2.PANC-1 71 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 691 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 545 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 658 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 601 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 691 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 307 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 429 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 286 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 297 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 407 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 688 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 521 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 691 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 284 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 347 bp overlap
ChIP hESC GSE18292.NANOG.hESC 89 bp overlap
ChIP hESC GSE18292.NANOG.hESC 193 bp overlap
Nfat5 1 dataset
Motif DE_24h DE_24h-Nfat5_MA0606.3 8 bp overlap
POU4F1 1 dataset
Motif DE_24h DE_24h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_24h DE_24h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_24h DE_24h-POU4F3_MA0791.2 12 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 393 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 664 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 365 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 505 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 356 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 625 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 691 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 504 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 573 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 668 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 370 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 593 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 271 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 265 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 285 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 336 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 60 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 355 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 353 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 113 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 364 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 158 bp overlap
ChIP WTC11 ENCFF688PEU 501 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 551 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 388 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 214 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 518 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 457 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 317 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 114 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 124 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 110 bp overlap
ZNF184 1 dataset
Motif DE_24h DE_24h-ZNF184_MA2120.1 13 bp overlap
ZNF214 1 dataset
Motif DE_24h DE_24h-ZNF214_MA1975.2 13 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 218 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 145 bp overlap
ZNF784 1 dataset
Motif ES_0h ES_0h-ZNF784_MA1717.2 8 bp overlap
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