chr1 : 221,967,531 – 221,967,855
324 bp 47 TFs 1 linked gene
This 324 bp open chromatin element is linked to LINC02474 and is bound by 47 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02474 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:221,962,531 – 221,972,855
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_36h DE_36h-ASCL1_MA1631.2 9 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap
FEZF2 1 dataset
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 324 bp overlap
ChIP DE DE-GATA4-2 324 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 324 bp overlap
ChIP DE DE-GATA6-2 324 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 324 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 324 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 324 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 324 bp overlap
HOXA10 2 datasets
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXD9 2 datasets
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
IRF4 1 dataset
Motif DE_36h DE_36h-IRF4_MA1419.2 14 bp overlap
IRF8 1 dataset
Motif DE_36h DE_36h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_36h DE_36h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
KLF10 1 dataset
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_36h DE_36h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
MAZ 3 datasets
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
PATZ1 1 dataset
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 295 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 236 bp overlap
PRDM9 4 datasets
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 1 dataset
Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap
Rarb 2 datasets
Motif DE_36h DE_36h-Rarb_MA0858.1 17 bp overlap
Motif DE_48h DE_48h-Rarb_MA0858.1 17 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 324 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 324 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 324 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 324 bp overlap
SNAI1 1 dataset
Motif DE_36h DE_36h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_36h DE_36h-SNAI3_MA1559.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 242 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 324 bp overlap
SP1 3 datasets
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
Motif DE_48h DE_48h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_36h DE_36h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
SP4 3 datasets
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
SP5 3 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_36h DE_36h-SP8_MA0747.2 11 bp overlap
TCF12 1 dataset
Motif DE_36h DE_36h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_36h DE_36h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_36h DE_36h-TCF4_MA0830.3 8 bp overlap
ZBTB32 1 dataset
Motif DE_36h DE_36h-ZBTB32_MA1580.1 10 bp overlap
ZEB1 1 dataset
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN5 2 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 3 datasets
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
ZNF281 2 datasets
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ChIP K562 ENCFF594VNM 324 bp overlap
ZNF410 2 datasets
Motif DE_36h DE_36h-ZNF410_MA0752.2 16 bp overlap
Motif DE_48h DE_48h-ZNF410_MA0752.2 16 bp overlap
ZNF770 1 dataset
Motif DE_36h DE_36h-ZNF770_MA2099.1 8 bp overlap
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