chr13 : 106,110,239 – 106,110,523
284 bp 27 TFs 0 linked genes
This 284 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:106,105,239 – 106,115,523
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 144 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 165 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 165 bp overlap
BRD4 3 datasets
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 95 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 95 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 228 bp overlap
CTCF 88 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 239 bp overlap
ChIP AG04449 ENCFF248MBD 181 bp overlap
ChIP AG09309 ENCFF478XPS 235 bp overlap
ChIP AG10803 ENCFF549AQK 219 bp overlap
ChIP BE2C ENCFF757SRF 260 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 193 bp overlap
ChIP Caco-2 ENCFF753NZV 284 bp overlap
ChIP Caco-2 ENCFF934QYS 197 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 156 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 186 bp overlap
ChIP GM23338 ENCFF531QOI 284 bp overlap
ChIP GM23338 ENCFF772DML 193 bp overlap
ChIP H1 ENCFF764RHO 243 bp overlap
ChIP H54 ENCFF255TVO 219 bp overlap
ChIP H9 ENCFF152GTF 212 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 163 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 195 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 220 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 215 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 203 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 175 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 214 bp overlap
ChIP HCT116 ENCFF003KHP 284 bp overlap
ChIP HCT116 ENCFF003KHP 90 bp overlap
ChIP HCT116 ENCFF209YMI 250 bp overlap
ChIP HFF ENCSR000DUM.CTCF.HFF 165 bp overlap
ChIP HFFc6 ENCFF005CJI 284 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 193 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 96 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 258 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 97 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 113 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 81 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 150 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 223 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 118 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 251 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 284 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 284 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 233 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 266 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 164 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 135 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 164 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 111 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 174 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 215 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 265 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 215 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 219 bp overlap
ChIP endodermal cell ENCFF471YCZ 203 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 206 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 143 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 223 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 284 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 278 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 202 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 129 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 182 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 125 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 141 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 132 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 122 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 219 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 165 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 171 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 170 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 256 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 219 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 170 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 153 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 180 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 171 bp overlap
ChIP keratinocyte ENCFF667ULX 258 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 254 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 225 bp overlap
ChIP myotube ENCFF981UHL 284 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 211 bp overlap
ChIP neural progenitor cell ENCFF420RBO 284 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 247 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 284 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 127 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 237 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 284 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 257 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 248 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 148 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 132 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 66 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 139 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 284 bp overlap
MAX 1 dataset
ChIP A549 ENCFF310XGQ 138 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 284 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 176 bp overlap
NR3C1 3 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 104 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 140 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 166 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_PPARG_HYPO GSE50144.PPARG.HUVEC-C_PPARG_HYPO 124 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 229 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 211 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 236 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 219 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 184 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 153 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 206 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 200 bp overlap
RELA 1 dataset
ChIP KB_IL GSE52469.RELA.KB_IL 111 bp overlap
REST 7 datasets
ChIP H1 ENCFF429RUE 206 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 120 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 168 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 111 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 125 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 149 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 169 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 103 bp overlap
SMC1 2 datasets
ChIP HCT-116 GSE131606.SMC1.HCT-116 192 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 184 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 172 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 142 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 198 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 172 bp overlap
TP63 2 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 96 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 52 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 153 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 164 bp overlap
ZNF143 1 dataset
ChIP HeLa GSE39263.ZNF143.HeLa 65 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 185 bp overlap
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