chr1 : 24,508,271 – 24,508,712
441 bp 46 TFs 2 linked genes
This 441 bp open chromatin element is linked to RCAN3 and NCMAP-DT and is bound by 46 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RCAN3 5.4 kb Proximal Proximity
NCMAP-DT 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:24,503,271 – 24,513,712
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AHR 2 datasets
ChIP MCF-7_TCDD_1d GSE90550.AHR.MCF-7_TCDD_1d 171 bp overlap
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 228 bp overlap
AR 11 datasets
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 135 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 258 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 245 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 193 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 361 bp overlap
ChIP breast_tumor_Male_30 GSE104399.AR.breast_tumor_Male_30 288 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 441 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 205 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 234 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 179 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 188 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 117 bp overlap
BMI1 1 dataset
ChIP K-562 ENCSR782WRO.BMI1.K-562 289 bp overlap
BRD4 3 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 273 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 192 bp overlap
CBX2 2 datasets
ChIP K562 ENCFF578AQI 441 bp overlap
ChIP K562 ENCFF578AQI 221 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 127 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 139 bp overlap
CTCF 3 datasets
ChIP body of pancreas ENCFF881RGF 281 bp overlap
ChIP islet ERP004003.CTCF.islet 270 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 173 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 167 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 196 bp overlap
ESR1 21 datasets
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 177 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 279 bp overlap
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 240 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 262 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 123 bp overlap
ChIP T-47D_E2 GSE125594.ESR1.T-47D_E2 164 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 296 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 318 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 163 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 276 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 293 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 397 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 189 bp overlap
ChIP breast_tumor_Male_15 GSE104399.ESR1.breast_tumor_Male_15 221 bp overlap
ChIP breast_tumor_Male_18 GSE104399.ESR1.breast_tumor_Male_18 215 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 251 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 408 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 167 bp overlap
ChIP breast_tumor_Male_30 GSE104399.ESR1.breast_tumor_Male_30 334 bp overlap
ChIP breast_tumor_Male_8 GSE104399.ESR1.breast_tumor_Male_8 291 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 174 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 352 bp overlap
ESRRA 3 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 360 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 353 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 309 bp overlap
ETV1 1 dataset
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 82 bp overlap
FOXA1 51 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 312 bp overlap
ChIP LNCaP GSE56288.FOXA1.LNCaP 245 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 226 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 265 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 255 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 186 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 139 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 242 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 272 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 225 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 233 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 141 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 118 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 207 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 137 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 210 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 208 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 161 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 139 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 126 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 210 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 125 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 142 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 143 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 223 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 201 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 207 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 225 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 256 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 134 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 234 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 242 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 343 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 245 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 267 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 191 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 219 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 216 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 235 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 222 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 209 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 161 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 304 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 427 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 441 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 269 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 242 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 218 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 269 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 282 bp overlap
ChIP prostate_2484 GSE130408.FOXA1.prostate_2484 178 bp overlap
FOXA2 8 datasets
ChIP DE DE-FOXA2-1 441 bp overlap
ChIP DE DE-FOXA2-2 441 bp overlap
ChIP HepG2 ENCFF570ABM 336 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 216 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 441 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 441 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 426 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 343 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 274 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 385 bp overlap
ChIP DE DE-GATA4-2 441 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 329 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 412 bp overlap
ChIP DE DE-GATA6-2 441 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 272 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 357 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 361 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 140 bp overlap
HOXB13 4 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 90 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 194 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 313 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 230 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 318 bp overlap
MYB 3 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 175 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 169 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 211 bp overlap
MYC 1 dataset
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 241 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 261 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 196 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 187 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 66 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 441 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 387 bp overlap
POLR2A 3 datasets
ChIP body of pancreas ENCFF727UBE 372 bp overlap
ChIP prostate gland ENCFF881OMH 116 bp overlap
ChIP stomach ENCFF820WZN 205 bp overlap
RNF2 5 datasets
ChIP K-562 ENCSR138FUZ.RNF2.K-562 441 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 441 bp overlap
ChIP K562 ENCFF022XJR 198 bp overlap
ChIP K562 ENCFF295YTA 56 bp overlap
ChIP K562 ENCFF653BQJ 349 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE68976.RUNX1.Jurkat 173 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 275 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 285 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 255 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 373 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 343 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 324 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 202 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 249 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 190 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 262 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 211 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 153 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 182 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 194 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 441 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 334 bp overlap
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