chr13 : 54,572,016 54,572,314
298 bp 23 TFs 1 linked gene
This 298 bp open chromatin element is linked to ENSG00000287460 and is bound by 23 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000287460 39 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:54,567,016 – 54,577,314
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
BRD2 6 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 253 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA_JQ1 250 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 298 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 273 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 273 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 237 bp overlap
BRD4 17 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 268 bp overlap
ChIP HEK293T GSE51633.BRD4.HEK293T 213 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 173 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 234 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 234 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 177 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 178 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 280 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 219 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 252 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 298 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 298 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 298 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 298 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 260 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 298 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 227 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 216 bp overlap
CDK9 1 dataset
ChIP HEK293T_SICTR GSE51633.CDK9.HEK293T_SICTR 155 bp overlap
ELF4 1 dataset
ChIP HEK293T ENCFF509MGU 251 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 169 bp overlap
GATA3 2 datasets
ChIP MCF-7 ENCFF352QVM 298 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 167 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-1 243 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 249 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 158 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 177 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 140 bp overlap
POLR2A 2 datasets
ChIP MCF-7 ENCFF309IKZ 126 bp overlap
ChIP body of pancreas ENCFF501FEC 298 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 209 bp overlap
RUVBL2 3 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 275 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 179 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 173 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 209 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 209 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 88 bp overlap
SUPT5H 1 dataset
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 169 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 191 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 168 bp overlap
YY1 5 datasets
ChIP H1 ENCFF524BTL 235 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 298 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 298 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 229 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 194 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 68 bp overlap
ChIP HEK293 ENCFF752TCU 296 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 231 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 292 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 198 bp overlap