chr13 : 52,838,531 52,838,949
418 bp 32 TFs 1 linked gene
This 418 bp open chromatin element is linked to PCDH8 and is bound by 32 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PCDH8 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:52,833,531 – 52,843,949
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 304 bp overlap
BRD4 1 dataset
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 409 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 216 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 171 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
CTCF 1 dataset
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 80 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 119 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 167 bp overlap
EZH2 2 datasets
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 290 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 360 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 143 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-2 304 bp overlap
ChIP foregut GSE117136.GATA4.foregut 317 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 344 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 268 bp overlap
ChIP DE DE-GATA6-2 325 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 387 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 418 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 366 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 381 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 418 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 418 bp overlap
ChIP foregut GSE117136.GATA6.foregut 389 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 352 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 295 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 268 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 385 bp overlap
ChIP HEK293 ENCFF299RSE 254 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 410 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 304 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 111 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 115 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 209 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 165 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 320 bp overlap
ChIP HEK293 ENCFF711QQB 320 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 385 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 385 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 298 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 277 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 227 bp overlap
THRB 1 dataset
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 170 bp overlap
TRIM28 4 datasets
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 264 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 292 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 292 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 221 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 398 bp overlap
ChIP K562 ENCFF731UTU 306 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 144 bp overlap
ZIC2 2 datasets
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 227 bp overlap
ChIP HEK293 ENCFF033NQQ 376 bp overlap
ZIC5 1 dataset
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 285 bp overlap
ZNF140 1 dataset
ChIP HEK293 GSE76494.ZNF140.HEK293 194 bp overlap
ZNF418 1 dataset
ChIP HEK293 GSE76494.ZNF418.HEK293 128 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 215 bp overlap