chr12 : 90,091,942 90,092,099
157 bp 29 TFs 0 linked genes
This 157 bp open chromatin element has no linked target genes and is bound by 29 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:90,086,942 – 90,097,099
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 91 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 139 bp overlap
BRD2 1 dataset
ChIP NCI-H23 GSE113714.BRD2.NCI-H23 72 bp overlap
BRD4 1 dataset
ChIP HCC1395 GSE63581.BRD4.HCC1395 55 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 157 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 66 bp overlap
ChIP neural cell ENCFF442QNK 157 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 53 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 154 bp overlap
FOSB 1 dataset
ChIP A549 ENCFF029EEU 89 bp overlap
GATA1 1 dataset
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 56 bp overlap
HDAC2 2 datasets
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 157 bp overlap
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 157 bp overlap
HMGA1 1 dataset
ChIP IMR-90_ctrl GSE111841.HMGA1.IMR-90_ctrl 157 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 53 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 130 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 102 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 157 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 51 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 154 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 96 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 138 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 157 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 145 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 110 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 66 bp overlap
SNAI2 2 datasets
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 157 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 137 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
ZNF263 1 dataset
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ZNF460 1 dataset
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
Zfp335 1 dataset
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap