chr12 : 5,030,134 – 5,030,438
304 bp 36 TFs 1 linked gene
This 304 bp open chromatin element is linked to ENSG00000256654 and is bound by 36 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000256654 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:5,025,134 – 5,035,438
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
AR 6 datasets
ChIP MCF-7 ERP001226.AR.MCF-7 193 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 177 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 251 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 238 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 232 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 220 bp overlap
ARNT 1 dataset
ChIP A-549 GSE85352.ARNT.A-549 272 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 304 bp overlap
CTCF 10 datasets
ChIP HCT116 ENCFF209YMI 105 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 160 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 177 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 143 bp overlap
ChIP endodermal cell ENCFF471YCZ 133 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 152 bp overlap
EGR1 1 dataset
ChIP macrophage_D1 GSE136216.EGR1.macrophage_D1 183 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 304 bp overlap
ESR1 28 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 243 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 243 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 193 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 263 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 284 bp overlap
ChIP MCF-7_E2-320min-ERalpha GSE94023.ESR1.MCF-7_E2-320min-ERalpha 143 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 131 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 303 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 304 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 304 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 296 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 261 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 216 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 263 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 169 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 174 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 263 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 304 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 304 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 290 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 304 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 129 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 273 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 246 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 227 bp overlap
ChIP breast_tumor_Male_17 GSE104399.ESR1.breast_tumor_Male_17 176 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 275 bp overlap
ChIP breast_tumor_Male_5 GSE104399.ESR1.breast_tumor_Male_5 272 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 304 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 252 bp overlap
FOXA1 6 datasets
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 266 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 267 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 303 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 202 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 304 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 304 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 243 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 269 bp overlap
ChIP DE DE-GATA4-2 304 bp overlap
ChIP foregut GSE117136.GATA4.foregut 250 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 280 bp overlap
ChIP DE DE-GATA6-2 304 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 304 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 304 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 304 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 304 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 304 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 304 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 295 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 177 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 304 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 304 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 304 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 304 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 304 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 304 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 304 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 144 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 294 bp overlap
NR3C1 3 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 192 bp overlap
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 255 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 190 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 149 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 177 bp overlap
PGR 2 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 277 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 301 bp overlap
RELA 4 datasets
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 177 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 165 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 172 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 158 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 179 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 304 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 304 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 304 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 304 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 304 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 304 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 304 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 304 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 150 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 198 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 188 bp overlap
SMARCA4 2 datasets
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 101 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 192 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 304 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 304 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 269 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 227 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 304 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 294 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 218 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 154 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 233 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 304 bp overlap
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