chr12 : 1,642,503 1,643,018
515 bp 36 TFs 3 linked genes
This 515 bp open chromatin element is linked to ADIPOR2, FBXL14, and WNT5B and is bound by 36 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
ADIPOR2 48.2 kb Distal Multiome
FBXL14 48.3 kb Distal Multiome
WNT5B 113.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:1,637,503 – 1,648,018
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP GSE110655.AR.LNCaP 195 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 181 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 203 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 152 bp overlap
ASH2L 1 dataset
ChIP VCaP GSE60841.ASH2L.VCaP 328 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 248 bp overlap
BHLHE40 3 datasets
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 179 bp overlap
ChIP K-562 ENCSR000EGV.BHLHE40.K-562 218 bp overlap
ChIP K562 ENCFF923NJI 290 bp overlap
BRD4 2 datasets
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 102 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 305 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 225 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 134 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 237 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 243 bp overlap
ESR1 2 datasets
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 59 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 52 bp overlap
FOXA1 1 dataset
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 234 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 383 bp overlap
GABPA 2 datasets
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 212 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 132 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 252 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 515 bp overlap
ChIP DE DE-GATA4-2 509 bp overlap
ChIP G296S GSE85628.GATA4.G296S 83 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 83 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 117 bp overlap
ChIP foregut GSE117136.GATA4.foregut 410 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 515 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 310 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 463 bp overlap
ChIP DE DE-GATA6-2 514 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 499 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 470 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 515 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 515 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 515 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 515 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 209 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 449 bp overlap
ChIP foregut GSE117136.GATA6.foregut 502 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 337 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 442 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 459 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 116 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 279 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 129 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 70 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 168 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 168 bp overlap
HOXB13 2 datasets
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 145 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 199 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 405 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 515 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 324 bp overlap
MYC 3 datasets
ChIP GP5D GSE51234.MYC.GP5D 418 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 310 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 255 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 368 bp overlap
NANOG 2 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 190 bp overlap
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 189 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 434 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 161 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 495 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 515 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 515 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 272 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 514 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 429 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 515 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 515 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 262 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 139 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 274 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 255 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 192 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 182 bp overlap