chr12 : 669,635 670,134
499 bp 33 TFs 6 linked genes
This 499 bp open chromatin element is linked to 6 target genes and is bound by 33 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
NINJ2-AS1 27.2 kb Distal Multiome
WNK1 82.7 kb Distal Multiome
B4GALNT3 209.9 kb Distal Multiome
CCDC77 268.2 kb Distal Multiome
RAD52 279.8 kb Distal Multiome
KDM5A 280.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:664,635 – 675,134
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
BCL11A 1 dataset
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 107 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 195 bp overlap
BRD4 8 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 499 bp overlap
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 348 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 499 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 264 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 499 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 441 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 455 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 387 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 133 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-FOXA2-1 444 bp overlap
ChIP DE DE-FOXA2-2 434 bp overlap
GATA1 2 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 124 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 298 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 141 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 426 bp overlap
GATA3 2 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 277 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 234 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 499 bp overlap
ChIP DE DE-GATA4-2 499 bp overlap
ChIP foregut GSE117136.GATA4.foregut 389 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 376 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 499 bp overlap
ChIP DE DE-GATA6-2 499 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 368 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 416 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 499 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 400 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 322 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 462 bp overlap
ChIP foregut GSE117136.GATA6.foregut 465 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCFF238LYK 93 bp overlap
ChIP GM12878 ENCFF918AID 136 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 167 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 116 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 272 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 150 bp overlap
ChIP GM12878 ENCFF995GXC 72 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCFF615CWQ 133 bp overlap
MYB 4 datasets
ChIP DU528 GSE94000.MYB.DU528 284 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 322 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 321 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 276 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 107 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 156 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCFF340KVJ 163 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCFF259FWL 156 bp overlap
NKRF 1 dataset
ChIP GM12878 ENCFF392NLB 134 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCFF916JXQ 57 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 499 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 262 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 468 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 486 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 365 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 274 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 258 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 426 bp overlap
TAL1 2 datasets
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 346 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 238 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCFF919OMX 154 bp overlap
ZNF217 2 datasets
ChIP GM12878 ENCFF978IGL 64 bp overlap
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 121 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 60 bp overlap