chr11 : 25,602,202 – 25,602,480
278 bp 88 TFs 0 linked genes
This 278 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:25,597,202 – 25,607,480
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ALX3 2 datasets
Motif DE_36h DE_36h-ALX3_MA0634.2 6 bp overlap
Motif DE_60h DE_60h-ALX3_MA0634.2 6 bp overlap
ARGFX 2 datasets
Motif DE_36h DE_36h-ARGFX_MA1463.2 8 bp overlap
Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap
Ahr::Arnt 2 datasets
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 278 bp overlap
CTCF 1 dataset
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 187 bp overlap
DRGX 2 datasets
Motif DE_36h DE_36h-DRGX_MA1481.2 6 bp overlap
Motif DE_60h DE_60h-DRGX_MA1481.2 6 bp overlap
EMX1 2 datasets
Motif DE_36h DE_36h-EMX1_MA0612.3 6 bp overlap
Motif DE_60h DE_60h-EMX1_MA0612.3 6 bp overlap
EMX2 2 datasets
Motif DE_36h DE_36h-EMX2_MA0886.2 6 bp overlap
Motif DE_60h DE_60h-EMX2_MA0886.2 6 bp overlap
EN1 2 datasets
Motif DE_36h DE_36h-EN1_MA0027.3 6 bp overlap
Motif DE_60h DE_60h-EN1_MA0027.3 6 bp overlap
EN2 2 datasets
Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap
Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 98 bp overlap
ESX1 2 datasets
Motif DE_36h DE_36h-ESX1_MA0644.3 7 bp overlap
Motif DE_60h DE_60h-ESX1_MA0644.3 7 bp overlap
ETV1 1 dataset
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap
EVX1 2 datasets
Motif DE_36h DE_36h-EVX1_MA0887.2 6 bp overlap
Motif DE_60h DE_60h-EVX1_MA0887.2 6 bp overlap
EVX2 2 datasets
Motif DE_36h DE_36h-EVX2_MA0888.2 6 bp overlap
Motif DE_60h DE_60h-EVX2_MA0888.2 6 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 278 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 273 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 278 bp overlap
ChIP DE DE-FOXA2-2 278 bp overlap
FOXO1::ELK3 1 dataset
Motif DE_36h DE_36h-FOXO1ELK3_MA1955.2 13 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 278 bp overlap
ChIP DE DE-GATA4-2 278 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 278 bp overlap
ChIP DE DE-GATA6-2 278 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 193 bp overlap
GBX1 2 datasets
Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap
Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap
GSX1 2 datasets
Motif DE_36h DE_36h-GSX1_MA0892.2 6 bp overlap
Motif DE_60h DE_60h-GSX1_MA0892.2 6 bp overlap
GSX2 2 datasets
Motif DE_36h DE_36h-GSX2_MA0893.3 7 bp overlap
Motif DE_60h DE_60h-GSX2_MA0893.3 7 bp overlap
HOXA1 2 datasets
Motif DE_36h DE_36h-HOXA1_MA1495.2 6 bp overlap
Motif DE_60h DE_60h-HOXA1_MA1495.2 6 bp overlap
HOXA2 2 datasets
Motif DE_36h DE_36h-HOXA2_MA0900.3 6 bp overlap
Motif DE_60h DE_60h-HOXA2_MA0900.3 6 bp overlap
HOXA3 2 datasets
Motif DE_36h DE_36h-HOXA3_MA2119.1 7 bp overlap
Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap
HOXB1 2 datasets
Motif DE_36h DE_36h-HOXB1_MA2093.1 7 bp overlap
Motif DE_60h DE_60h-HOXB1_MA2093.1 7 bp overlap
HOXB2 2 datasets
Motif DE_36h DE_36h-HOXB2_MA0902.3 6 bp overlap
Motif DE_60h DE_60h-HOXB2_MA0902.3 6 bp overlap
HOXB3 2 datasets
Motif DE_36h DE_36h-HOXB3_MA0903.2 6 bp overlap
Motif DE_60h DE_60h-HOXB3_MA0903.2 6 bp overlap
HOXB5 2 datasets
Motif DE_36h DE_36h-HOXB5_MA0904.3 6 bp overlap
Motif DE_60h DE_60h-HOXB5_MA0904.3 6 bp overlap
HOXC8 2 datasets
Motif DE_36h DE_36h-HOXC8_MA1505.2 6 bp overlap
Motif DE_60h DE_60h-HOXC8_MA1505.2 6 bp overlap
HOXD3 2 datasets
Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
IRF3 1 dataset
Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap
IRF8 1 dataset
Motif DE_36h DE_36h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_36h DE_36h-IRF9_MA0653.1 15 bp overlap
ISX 2 datasets
Motif DE_36h DE_36h-ISX_MA0654.2 6 bp overlap
Motif DE_60h DE_60h-ISX_MA0654.2 6 bp overlap
Ikzf3 1 dataset
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Irf1 2 datasets
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 278 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 203 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 225 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 278 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 244 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 278 bp overlap
LBX1 2 datasets
Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap
Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap
LHX5 2 datasets
Motif DE_36h DE_36h-LHX5_MA1519.2 7 bp overlap
Motif DE_60h DE_60h-LHX5_MA1519.2 7 bp overlap
LHX6 2 datasets
Motif DE_36h DE_36h-LHX6_MA0658.2 8 bp overlap
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
LHX9 2 datasets
Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap
Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap
LMX1A 2 datasets
Motif DE_36h DE_36h-LMX1A_MA0702.3 7 bp overlap
Motif DE_60h DE_60h-LMX1A_MA0702.3 7 bp overlap
LMX1B 2 datasets
Motif DE_36h DE_36h-LMX1B_MA0703.3 8 bp overlap
Motif DE_60h DE_60h-LMX1B_MA0703.3 8 bp overlap
Lhx1 2 datasets
Motif DE_36h DE_36h-Lhx1_MA1518.3 10 bp overlap
Motif DE_60h DE_60h-Lhx1_MA1518.3 10 bp overlap
Lhx4 2 datasets
Motif DE_36h DE_36h-Lhx4_MA0704.2 6 bp overlap
Motif DE_60h DE_60h-Lhx4_MA0704.2 6 bp overlap
Lhx8 2 datasets
Motif DE_36h DE_36h-Lhx8_MA0705.2 6 bp overlap
Motif DE_60h DE_60h-Lhx8_MA0705.2 6 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MEOX1 2 datasets
Motif DE_36h DE_36h-MEOX1_MA0661.2 7 bp overlap
Motif DE_60h DE_60h-MEOX1_MA0661.2 7 bp overlap
MEOX2 2 datasets
Motif DE_36h DE_36h-MEOX2_MA0706.2 7 bp overlap
Motif DE_60h DE_60h-MEOX2_MA0706.2 7 bp overlap
MIXL1 2 datasets
Motif DE_36h DE_36h-MIXL1_MA0662.2 6 bp overlap
Motif DE_60h DE_60h-MIXL1_MA0662.2 6 bp overlap
MNX1 2 datasets
Motif DE_36h DE_36h-MNX1_MA0707.3 6 bp overlap
Motif DE_60h DE_60h-MNX1_MA0707.3 6 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 150 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 185 bp overlap
NKX6-2 2 datasets
Motif DE_36h DE_36h-NKX6-2_MA0675.2 6 bp overlap
Motif DE_60h DE_60h-NKX6-2_MA0675.2 6 bp overlap
NOTO 2 datasets
Motif DE_36h DE_36h-NOTO_MA0710.2 7 bp overlap
Motif DE_60h DE_60h-NOTO_MA0710.2 7 bp overlap
NR4A1 2 datasets
Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif DE_36h DE_36h-NR4A2_MA0160.3 8 bp overlap
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
NR6A1 1 dataset
Motif DE_36h DE_36h-NR6A1_MA1541.2 14 bp overlap
PDX1 2 datasets
Motif DE_36h DE_36h-PDX1_MA0132.3 6 bp overlap
Motif DE_60h DE_60h-PDX1_MA0132.3 6 bp overlap
PHOX2A 2 datasets
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
POU6F1 2 datasets
Motif DE_36h DE_36h-POU6F1_MA0628.2 6 bp overlap
Motif DE_60h DE_60h-POU6F1_MA0628.2 6 bp overlap
POU6F2 2 datasets
Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
PRRX1 2 datasets
Motif DE_36h DE_36h-PRRX1_MA0716.2 6 bp overlap
Motif DE_60h DE_60h-PRRX1_MA0716.2 6 bp overlap
PRRX2 2 datasets
Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap
Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap
RAX2 2 datasets
Motif DE_36h DE_36h-RAX2_MA0717.2 6 bp overlap
Motif DE_60h DE_60h-RAX2_MA0717.2 6 bp overlap
SHOX 2 datasets
Motif DE_36h DE_36h-SHOX_MA0630.2 6 bp overlap
Motif DE_60h DE_60h-SHOX_MA0630.2 6 bp overlap
SMARCA4 2 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 278 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 278 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 163 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 234 bp overlap
SOX21 1 dataset
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 247 bp overlap
Shox2 2 datasets
Motif DE_36h DE_36h-Shox2_MA0720.2 6 bp overlap
Motif DE_60h DE_60h-Shox2_MA0720.2 6 bp overlap
Sox1 1 dataset
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Stat2 1 dataset
Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap
TLX2 2 datasets
Motif DE_36h DE_36h-TLX2_MA1577.2 6 bp overlap
Motif DE_60h DE_60h-TLX2_MA1577.2 6 bp overlap
UNCX 2 datasets
Motif DE_36h DE_36h-UNCX_MA0721.2 6 bp overlap
Motif DE_60h DE_60h-UNCX_MA0721.2 6 bp overlap
VAX1 2 datasets
Motif DE_36h DE_36h-VAX1_MA0722.2 7 bp overlap
Motif DE_60h DE_60h-VAX1_MA0722.2 7 bp overlap
VAX2 2 datasets
Motif DE_36h DE_36h-VAX2_MA0723.3 6 bp overlap
Motif DE_60h DE_60h-VAX2_MA0723.3 6 bp overlap
VSX1 2 datasets
Motif DE_36h DE_36h-VSX1_MA0725.2 7 bp overlap
Motif DE_60h DE_60h-VSX1_MA0725.2 7 bp overlap
VSX2 2 datasets
Motif DE_36h DE_36h-VSX2_MA0726.2 7 bp overlap
Motif DE_60h DE_60h-VSX2_MA0726.2 7 bp overlap
ZIM3 1 dataset
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
ZNF331 1 dataset
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF680 1 dataset
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
mix-a 2 datasets
Motif DE_36h DE_36h-mix-a_MA0621.2 7 bp overlap
Motif DE_60h DE_60h-mix-a_MA0621.2 7 bp overlap
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