chr9 : 116,764,895 116,765,572
677 bp 32 TFs 2 linked genes
This 677 bp open chromatin element is linked to TRIM32 and ASTN2 and is bound by 32 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TRIM32 77.8 kb Distal Multiome
ASTN2 649.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:116,759,895 – 116,770,572
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 150 bp overlap
BRD4 4 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 357 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 416 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 497 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 291 bp overlap
CTCF 1 dataset
ChIP THP-1_siNIPBL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-4h 186 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 142 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 127 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 285 bp overlap
EZH2 3 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 401 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 505 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 269 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 297 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 677 bp overlap
ChIP DE DE-FOXA2-2 677 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 286 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 677 bp overlap
ChIP DE DE-GATA4-2 677 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 599 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 596 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 677 bp overlap
ChIP DE DE-GATA6-2 677 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 395 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 513 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 618 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 677 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 652 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 591 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 587 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 307 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 648 bp overlap
MAFF 2 datasets
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Mafb 2 datasets
Motif DE_48h DE_48h-Mafb_MA0117.3 11 bp overlap
Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap
NRL 1 dataset
Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap
POU3F3 2 datasets
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
Motif DE_72h DE_72h-POU3F3_MA0788.1 13 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
Pparg::Rxra 2 datasets
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_72h DE_72h-PpargRxra_MA0065.3 13 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 677 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 457 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 416 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 400 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 418 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 677 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 450 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 160 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 318 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 462 bp overlap
SPI1 1 dataset
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 168 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 164 bp overlap
SREBF2 2 datasets
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
Motif DE_72h DE_72h-SREBF2_MA0596.1 10 bp overlap
Six3 1 dataset
Motif DE_60h DE_60h-Six3_MA0631.2 11 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 278 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
ZNF35 2 datasets
Motif DE_48h DE_48h-ZNF35_MA2333.1 7 bp overlap
Motif DE_72h DE_72h-ZNF35_MA2333.1 7 bp overlap
ZNF44 1 dataset
ChIP HEK293T GSE78099.ZNF44.HEK293T 287 bp overlap
ZNF75A 2 datasets
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 2 datasets
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap