chr9 : 107,472,726 – 107,473,204
478 bp 42 TFs 1 linked gene
This 478 bp open chromatin element is linked to LINC01509 and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01509 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:107,467,726 – 107,478,204
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 141 bp overlap
AR 11 datasets
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 367 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 468 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 478 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 308 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 478 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 478 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 452 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 157 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 181 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 456 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 421 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 478 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 89 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 116 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 157 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 354 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 147 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 223 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 311 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 460 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 241 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 97 bp overlap
CTCF 4 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 64 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 303 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 271 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 287 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 389 bp overlap
ERG 3 datasets
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 179 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 126 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 278 bp overlap
ESR1 3 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 154 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 154 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 163 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 478 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 190 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 99 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 114 bp overlap
ChIP DE DE-FOXA2-1 478 bp overlap
ChIP DE DE-FOXA2-2 478 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 216 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 53 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 97 bp overlap
ChIP DE DE-GATA4-1 474 bp overlap
ChIP DE DE-GATA4-2 478 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 316 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 358 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 478 bp overlap
ChIP DE DE-GATA6-2 478 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 275 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 118 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 59 bp overlap
KLF4 2 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 58 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 214 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 51 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 89 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 386 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 278 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 326 bp overlap
ChIP hESC GSE18292.NANOG.hESC 198 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 187 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 172 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 164 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 478 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 222 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 349 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 164 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 210 bp overlap
POU2F3 2 datasets
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 167 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 237 bp overlap
POU5F1 7 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 468 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 428 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 478 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 464 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 478 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 152 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 176 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 478 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 264 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 478 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 478 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 236 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 478 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15690 GSE132290.SMARCA4.A-549_AG15690 292 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 99 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 98 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 54 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 198 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 211 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 302 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 278 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 279 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 478 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 141 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 151 bp overlap
ChIP hESC GSE18292.SOX2.hESC 178 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 91 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 297 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 478 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 387 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 147 bp overlap
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