chr9 : 88,990,355 88,990,494
139 bp 29 TFs 1 linked gene
This 139 bp open chromatin element is linked to S1PR3 and is bound by 29 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
S1PR3 367 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:88,985,355 – 88,995,494
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 122 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 139 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 139 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 139 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 139 bp overlap
BRD3 2 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 139 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 128 bp overlap
BRD4 3 datasets
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 139 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 90 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 139 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 139 bp overlap
CTCF 38 datasets
ChIP GM23338 ENCFF772DML 139 bp overlap
ChIP H1 ENCFF764RHO 139 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 96 bp overlap
ChIP Panc1 ENCFF056JQX 68 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 103 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 139 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 139 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 117 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 139 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 139 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 139 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 105 bp overlap
ChIP esophagus muscularis mucosa ENCFF544GAS 99 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 139 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR443WKD.CTCF.esophagus-muscularis-mucosa 139 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 139 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR353DFU.CTCF.esophagus_muscularis-mucosa 139 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR074SFL.CTCF.esophagus_muscularis-mucosa 136 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 139 bp overlap
ChIP fibroblast_LUNG ENCSR000DVA.CTCF.fibroblast_LUNG 139 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 139 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 139 bp overlap
ChIP gastroesophageal sphincter ENCFF918KPI 139 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 139 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 139 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 139 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 139 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 139 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 139 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 139 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 110 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 139 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 136 bp overlap
ChIP nephron ENCFF589HXU 139 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 139 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 115 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 139 bp overlap
EZH2 2 datasets
ChIP SF8628 GSE94834.EZH2.SF8628 139 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 139 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 139 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 61 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 139 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 139 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 139 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 139 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 54 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 139 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 139 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 139 bp overlap
ChIP H1 ENCFF967OJF 139 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 139 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 139 bp overlap
SMARCA4 3 datasets
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 139 bp overlap
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 69 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 139 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 112 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 139 bp overlap
TBP 1 dataset
ChIP hESC_8h GSE122298.TBP.hESC_8h 125 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 132 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 139 bp overlap
ChIP H1 ENCFF778PAX 139 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 139 bp overlap
TRIM28 3 datasets
ChIP AF22 GSE84259.TRIM28.AF22 139 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 116 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 121 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 139 bp overlap