chr9 : 21,904,875 – 21,905,274
399 bp 53 TFs 0 linked genes
This 399 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:21,899,875 – 21,910,274
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 62 bp overlap
CTCF 151 datasets
ChIP AG04450 ENCFF116DJL 297 bp overlap
ChIP AG09309 ENCFF478XPS 249 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 132 bp overlap
ChIP C4-2B ENCFF821XVN 399 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP DND-41 ENCFF913MRA 249 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 144 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 162 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 158 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 187 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 182 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 204 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 165 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 99 bp overlap
ChIP GM12873 ENCFF711LOS 259 bp overlap
ChIP GM23338 ENCFF531QOI 228 bp overlap
ChIP GM23338 ENCFF772DML 175 bp overlap
ChIP GM23338 ENCFF832KWE 399 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 206 bp overlap
ChIP H1 ENCFF764RHO 148 bp overlap
ChIP H9 ENCFF152GTF 234 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 248 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 197 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 242 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 198 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 188 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 206 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 203 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 287 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 399 bp overlap
ChIP HCT-116 GSE92879.CTCF.HCT-116 244 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 199 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 207 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 226 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 216 bp overlap
ChIP HCT116 ENCFF003KHP 113 bp overlap
ChIP HCT116 ENCFF209YMI 241 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 58 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 170 bp overlap
ChIP HFF ENCSR000DUM.CTCF.HFF 183 bp overlap
ChIP HFF-Myc ENCFF680WYR 282 bp overlap
ChIP HFFc6 ENCFF005CJI 190 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 113 bp overlap
ChIP HMS001 GSE143026.CTCF.HMS001 175 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 82 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 172 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 172 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 200 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 179 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 178 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 298 bp overlap
ChIP HeLa-S3 ENCFF565UFR 160 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 230 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 165 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 268 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 262 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 180 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 168 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 168 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 175 bp overlap
ChIP HepG2 ENCFF348BUL 180 bp overlap
ChIP KMS-11 ENCFF853JKX 357 bp overlap
ChIP Loucy ENCFF359TVQ 329 bp overlap
ChIP Loucy ENCFF359TVQ 299 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 261 bp overlap
ChIP OCI-LY1 ENCFF455ESK 348 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 226 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 342 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 268 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 369 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 160 bp overlap
ChIP PC-3 ENCFF487TUI 350 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 300 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 363 bp overlap
ChIP RWPE2 ENCFF911IEE 399 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 109 bp overlap
ChIP SK-N-SH ENCFF575DMG 343 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 263 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 205 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 363 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 296 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 152 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 146 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 142 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 206 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 133 bp overlap
ChIP astrocyte ENCFF042YJV 252 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 157 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 336 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 232 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 152 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 252 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 217 bp overlap
ChIP chondrocyte ENCFF134ORZ 360 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 240 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 180 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 296 bp overlap
ChIP endodermal cell ENCFF471YCZ 193 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 181 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 211 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 122 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 135 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLW.CTCF.endothelial_umbilical-vein 119 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 399 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 272 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 171 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 130 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 239 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 179 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 205 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 254 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 204 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 217 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 241 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 166 bp overlap
ChIP fibroblast_LUNG ENCSR000ANO.CTCF.fibroblast_LUNG 167 bp overlap
ChIP fibroblast_MAMMARY ENCSR000DUU.CTCF.fibroblast_MAMMARY 108 bp overlap
ChIP fibroblast_PEDAL_DIGIT_SKIN ENCSR000DPP.CTCF.fibroblast_PEDAL_DIGIT_SKIN 168 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 149 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 176 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 399 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 221 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 85 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 152 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 163 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 165 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 171 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 160 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 175 bp overlap
ChIP keratinocyte ENCFF046PBT 168 bp overlap
ChIP keratinocyte ENCFF291YDC 168 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 195 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 118 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 133 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 177 bp overlap
ChIP myotube ENCFF981UHL 284 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 175 bp overlap
ChIP neural progenitor cell ENCFF420RBO 103 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 183 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 165 bp overlap
ChIP osteoblast ENCFF491ZJZ 204 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 313 bp overlap
ChIP osteocyte ENCFF929FPD 345 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 173 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 193 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 160 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 342 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 243 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
FOXA1 1 dataset
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
FOXA2 1 dataset
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF13 1 dataset
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 158 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF6 2 datasets
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 114 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 315 bp overlap
RAD21 10 datasets
ChIP H1 ENCFF698EWO 236 bp overlap
ChIP H1 ENCFF967OJF 230 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 121 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 137 bp overlap
ChIP HCT116 ENCFF568PEO 263 bp overlap
ChIP Ishikawa ENCFF570JVV 206 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 124 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 187 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 171 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SMAD3 1 dataset
Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 94 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 120 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP8 2 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Smad4 1 dataset
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
ZKSCAN5 1 dataset
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
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