chr9 : 17,490,170 17,490,636
466 bp 43 TFs 0 linked genes
This 466 bp open chromatin element has no linked target genes and is bound by 43 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:17,485,170 – 17,495,636
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
BRD4 5 datasets
ChIP BE2C GSE80151.BRD4.BE2C 190 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 147 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 190 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 190 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 288 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 360 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 176 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 344 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 288 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 267 bp overlap
GATA1 1 dataset
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 190 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 330 bp overlap
ChIP SK-N-SH ENCFF764OZD 105 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 311 bp overlap
GATA3 8 datasets
ChIP BE2C GSE65664.GATA3.BE2C 209 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 295 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 283 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 233 bp overlap
ChIP SH-SY5Y ENCFF475HYF 159 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 459 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 280 bp overlap
ChIP SK-N-SH ENCFF040SSB 317 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 383 bp overlap
ChIP DE DE-GATA4-2 429 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 368 bp overlap
ChIP DE DE-GATA6-2 328 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 435 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 319 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 464 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 466 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 440 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 371 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 381 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 214 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 293 bp overlap
HOXB4 2 datasets
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap
HOXD4 2 datasets
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Hnf1A 1 dataset
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 333 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 287 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 243 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 228 bp overlap
Lef1 1 dataset
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 174 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 183 bp overlap
PHOX2A 1 dataset
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 339 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 271 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 436 bp overlap
POU1F1 1 dataset
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_48h DE_48h-POU2F2_MA0507.3 13 bp overlap
POU6F1 2 datasets
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
PROP1 1 dataset
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 327 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 251 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 348 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 317 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 286 bp overlap
SMARCA4 2 datasets
ChIP NGP GSE134626.SMARCA4.NGP 156 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 383 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 210 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 140 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 382 bp overlap
TCF7L2 1 dataset
Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 382 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 276 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 268 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 206 bp overlap
ZNF24 1 dataset
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap