chr1 : 115,840,598 115,840,885
287 bp 36 TFs 1 linked gene
This 287 bp open chromatin element is linked to NHLH2 and is bound by 36 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NHLH2 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:115,835,598 – 115,845,885
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 114 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 236 bp overlap
ESR1 1 dataset
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 163 bp overlap
EZH2 5 datasets
ChIP A673 ENCFF955JRZ 71 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 283 bp overlap
ChIP fibroblast of lung ENCFF479BAW 287 bp overlap
ChIP fibroblast of lung ENCFF479BAW 139 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 137 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 287 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 185 bp overlap
ChIP DE DE-FOXA2-1 236 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 146 bp overlap
GATA2 4 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 112 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 287 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 265 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 94 bp overlap
GATA3 3 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 116 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 287 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 133 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 73 bp overlap
ChIP DE DE-GATA4-1 287 bp overlap
ChIP DE DE-GATA4-2 287 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 287 bp overlap
ChIP foregut GSE117136.GATA4.foregut 287 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 247 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 275 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 287 bp overlap
ChIP DE DE-GATA6-2 287 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 248 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 250 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 287 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 287 bp overlap
ChIP foregut GSE117136.GATA6.foregut 260 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 180 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 206 bp overlap
KLF4 1 dataset
ChIP MCF-7 GSE41561.KLF4.MCF-7 142 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 287 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 164 bp overlap
OGT 1 dataset
ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 112 bp overlap
ONECUT1 2 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 110 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 253 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 152 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 287 bp overlap
POLR2A 1 dataset
ChIP gastroesophageal sphincter ENCFF070PCA 125 bp overlap
RNF2 5 datasets
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 287 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 273 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 83 bp overlap
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 54 bp overlap
ChIP hMSC_D10 GSE125166.RNF2.hMSC_D10 150 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 287 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 287 bp overlap
SNAI2 3 datasets
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 205 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.SNAI2.PC-9_1DF_DMSO 209 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.SNAI2.PC-9_2DF_DMSO 128 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 113 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 265 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 116 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 169 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 171 bp overlap
SUZ12 3 datasets
ChIP MCF-7 ENCFF739TYI 254 bp overlap
ChIP MCF-7 ENCSR757EMK.SUZ12.MCF-7 226 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 192 bp overlap
TCF7L2 4 datasets
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 287 bp overlap
ChIP HEK293 ENCFF513JQN 287 bp overlap
ChIP HEK293 ENCFF513JQN 251 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 172 bp overlap
TP53 1 dataset
ChIP H9 GSE142050.TP53.H9 219 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 97 bp overlap