chr1 : 115,793,165 – 115,793,627
462 bp 40 TFs 1 linked gene
This 462 bp open chromatin element is linked to CASQ2 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CASQ2 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:115,788,165 – 115,798,627
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 251 bp overlap
BCL11A 4 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 82 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 66 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 73 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 164 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 301 bp overlap
ChIP K562 ENCFF963TXY 141 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 331 bp overlap
ChIP K562 ENCFF673OEZ 220 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 313 bp overlap
CTCF 107 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 145 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 119 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 177 bp overlap
ChIP AG09309 ENCFF478XPS 180 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 157 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 136 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 173 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 118 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 205 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 168 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 171 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 129 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 142 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 230 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 110 bp overlap
ChIP HFFc6 ENCFF005CJI 337 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 113 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 275 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 171 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 245 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 194 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 94 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 100 bp overlap
ChIP HepG2 ENCFF348BUL 158 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 227 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 105 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 243 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 163 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 66 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 114 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 206 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 169 bp overlap
ChIP Loucy ENCFF359TVQ 286 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 221 bp overlap
ChIP MCF-7 ENCFF139NQI 189 bp overlap
ChIP MCF-7 ENCFF162GNE 179 bp overlap
ChIP MCF-7 ENCFF198DQX 175 bp overlap
ChIP MCF-7 ENCFF210JUZ 298 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 175 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 232 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 179 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 153 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 152 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 146 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 123 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 204 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 198 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 114 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 126 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 117 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 169 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 208 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 211 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 166 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 123 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 151 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 167 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 166 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 165 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 185 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 203 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 170 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 225 bp overlap
ChIP brain ENCFF163BBN 376 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 185 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 214 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 154 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 300 bp overlap
ChIP chondrocyte ENCFF134ORZ 364 bp overlap
ChIP endodermal cell ENCFF471YCZ 112 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 121 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 206 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 103 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 110 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 192 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 216 bp overlap
ChIP fibroblast_DERMAL ENCSR000APM.CTCF.fibroblast_DERMAL 145 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 128 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 148 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 114 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 191 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 234 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 166 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 137 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 366 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 270 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 221 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 133 bp overlap
ChIP keratinocyte ENCFF667ULX 213 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 462 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 232 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 230 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 311 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 122 bp overlap
ChIP myotube ENCFF981UHL 211 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 143 bp overlap
ChIP nephron ENCFF589HXU 331 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 122 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 193 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 291 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 158 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 283 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 262 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 203 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 304 bp overlap
CTCFL 1 dataset
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 131 bp overlap
ESR1 9 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 146 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 137 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 139 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 143 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 127 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 149 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 179 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 141 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 136 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 288 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 209 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 230 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 112 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 221 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 238 bp overlap
ChIP erythroblast ENCFF867JAR 462 bp overlap
ChIP erythroblast ENCFF867JAR 342 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 462 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 264 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 167 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 307 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 432 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 360 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 459 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 366 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 330 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 263 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 199 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 237 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 147 bp overlap
JUN 1 dataset
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 235 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 238 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 249 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 176 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 324 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 165 bp overlap
RAD21 4 datasets
ChIP MCF-7 ENCFF724VCQ 222 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 189 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 154 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 119 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 177 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 150 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 150 bp overlap
SMAD1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.SMAD1.CD34_ERYTH_BMP 129 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 462 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 462 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 383 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 462 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 462 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 400 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 280 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 176 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE76893.SMC1A.MCF-7 118 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 157 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 429 bp overlap
TAL1 15 datasets
ChIP CD34 GSE52924.TAL1.CD34 289 bp overlap
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 314 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 261 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 292 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 253 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 170 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 289 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 303 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 268 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 290 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 207 bp overlap
ChIP K562 ENCFF620GMX 165 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 259 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 287 bp overlap
TAL1_SCL 1 dataset
ChIP Jurkat GSE25000.TAL1_SCL.Jurkat 85 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 281 bp overlap
ChIP K562 ENCFF931DJY 162 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 194 bp overlap
TP63 4 datasets
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 291 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 229 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 218 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 182 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 462 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 227 bp overlap
ZKSCAN8 1 dataset
ChIP K562 ENCFF387ETI 462 bp overlap
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