chr6 : 56,522,109 56,522,728
619 bp 46 TFs 0 linked genes
This 619 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:56,517,109 – 56,527,728
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 109 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 187 bp overlap
ChIP HAP1 GSE108387.ARID1A.HAP1 80 bp overlap
BCL6B 3 datasets
ChIP HEK293 ENCFF555YRB 62 bp overlap
ChIP HEK293 ENCFF555YRB 264 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 192 bp overlap
BRD4 1 dataset
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 105 bp overlap
CDK8 7 datasets
ChIP SET-2 GSE65138.CDK8.SET-2 195 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 86 bp overlap
ChIP leiomyoma_PT916 GSE128230.CDK8.leiomyoma_PT916 55 bp overlap
ChIP leiomyoma_PT967 GSE128230.CDK8.leiomyoma_PT967 74 bp overlap
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 61 bp overlap
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 53 bp overlap
ChIP myometrium_PT967 GSE128230.CDK8.myometrium_PT967 67 bp overlap
CHD1 2 datasets
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 139 bp overlap
ChIP LNCaP_DHT GSE64528.CHD1.LNCaP_DHT 253 bp overlap
CTCF 10 datasets
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 63 bp overlap
ChIP colon_sigmoid ENCSR721AHD.CTCF.colon_sigmoid 219 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 311 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 272 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 218 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 334 bp overlap
ChIP gastroesophageal sphincter ENCFF918KPI 233 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 195 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 222 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 210 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 306 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 275 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 253 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 322 bp overlap
FOS 4 datasets
ChIP leiomyoma_PT1063 GSE128230.FOS.leiomyoma_PT1063 64 bp overlap
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 71 bp overlap
ChIP leiomyoma_PT967 GSE128230.FOS.leiomyoma_PT967 94 bp overlap
ChIP myometrium_PT1063 GSE128230.FOS.myometrium_PT1063 63 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 119 bp overlap
ChIP DE DE-FOXA2-1 482 bp overlap
ChIP DE DE-FOXA2-2 581 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 126 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 314 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 469 bp overlap
ChIP DE DE-GATA4-2 581 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 457 bp overlap
ChIP DE DE-GATA6-2 619 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 451 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 580 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 407 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 402 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 588 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 510 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 261 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 59 bp overlap
ChIP HepG2 ENCFF854JLR 130 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 240 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 237 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 148 bp overlap
MED12 6 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 106 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 86 bp overlap
ChIP leiomyoma_PT916 GSE128230.MED12.leiomyoma_PT916 55 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 92 bp overlap
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 132 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 110 bp overlap
NANOG 8 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 471 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 87 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 78 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 204 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 554 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 306 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 186 bp overlap
ChIP hESC GSE18292.NANOG.hESC 168 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 406 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 106 bp overlap
POLR2A 3 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 456 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 232 bp overlap
ChIP sigmoid colon ENCFF101ILL 321 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 249 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 183 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 133 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 236 bp overlap
RELA 2 datasets
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 90 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 89 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 582 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 449 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 461 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 85 bp overlap
SMARCA4 3 datasets
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 239 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 300 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 356 bp overlap
SMARCC1 4 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 164 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 108 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 83 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 300 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 389 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 405 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 98 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 227 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 235 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 189 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 446 bp overlap
ZFP69B 2 datasets
ChIP HEK293 ENCFF942LFP 74 bp overlap
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 173 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 98 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 619 bp overlap
ZNF749 1 dataset
ChIP HepG2 ENCFF992SKL 135 bp overlap