chr1 : 110,215,648 110,216,147
499 bp 33 TFs 2 linked genes
This 499 bp open chromatin element is linked to KCNC4 and KCNC4-DT and is bound by 33 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
KCNC4 5.3 kb Proximal Proximity
KCNC4-DT 5.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:110,210,648 – 110,221,147
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_Bag-1L_KO_Veh GSE89938.AR.LNCaP_Bag-1L_KO_Veh 138 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 127 bp overlap
CTCF 1 dataset
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 102 bp overlap
ESR1 2 datasets
ChIP T-47D GSE148277.ESR1.T-47D 211 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 86 bp overlap
ESRRA 2 datasets
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 164 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 84 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 232 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 139 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 152 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 406 bp overlap
ChIP DE DE-GATA4-2 425 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 362 bp overlap
ChIP DE DE-GATA6-2 424 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 371 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 439 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 417 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 380 bp overlap
ChIP foregut GSE117136.GATA6.foregut 335 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 169 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 318 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 234 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 187 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 266 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 50 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 69 bp overlap
KDM5B 2 datasets
ChIP HCC2157 GSE46055.KDM5B.HCC2157 62 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 51 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 115 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF743ZOF 58 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 152 bp overlap
ChIP L1236 GSE63736.NFKB1.L1236 104 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 96 bp overlap
NR2F2 2 datasets
ChIP liver ENCFF565JGD 147 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 202 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 92 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 304 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 200 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 85 bp overlap
STAT3 6 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 54 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 132 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 125 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 126 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 155 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 101 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 186 bp overlap
TEAD4 1 dataset
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 243 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 159 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 475 bp overlap