chr6 : 47,257,316 – 47,257,693
377 bp 65 TFs 0 linked genes
This 377 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:47,252,316 – 47,262,693
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 298 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 217 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 122 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 103 bp overlap
EBF1 2 datasets
Motif DE_36h DE_36h-EBF1_MA0154.5 11 bp overlap
Motif DE_48h DE_48h-EBF1_MA0154.5 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 374 bp overlap
Ebf4 2 datasets
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
Motif DE_48h DE_48h-Ebf4_MA2122.1 11 bp overlap
Elf5 1 dataset
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 377 bp overlap
ChIP DE DE-FOXA2-2 377 bp overlap
FOXC1 1 dataset
Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
FOXD3 1 dataset
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
FOXN3 1 dataset
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
GATA1::TAL1 2 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 377 bp overlap
ChIP DE DE-GATA4-2 377 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 377 bp overlap
ChIP DE DE-GATA6-2 377 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 377 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 377 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 377 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 377 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 377 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 377 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 377 bp overlap
HNF1A 2 datasets
Motif DE_36h DE_36h-HNF1A_MA0046.3 13 bp overlap
Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_36h DE_36h-HNF1B_MA0153.2 13 bp overlap
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
Hnf1A 2 datasets
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
INSM1 2 datasets
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
Motif DE_48h DE_48h-INSM1_MA0155.1 12 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 256 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 250 bp overlap
LIN54 1 dataset
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
Lef1 2 datasets
Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
Lhx3 2 datasets
Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap
Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap
MEIS1 4 datasets
Motif DE_36h DE_36h-MEIS1_MA1639.2 9 bp overlap
Motif DE_36h DE_36h-MEIS1_MA1639.2 9 bp overlap
Motif DE_48h DE_48h-MEIS1_MA1639.2 9 bp overlap
Motif DE_48h DE_48h-MEIS1_MA1639.2 9 bp overlap
MEIS2 4 datasets
Motif DE_36h DE_36h-MEIS2_MA1640.2 9 bp overlap
Motif DE_36h DE_36h-MEIS2_MA1640.2 9 bp overlap
Motif DE_48h DE_48h-MEIS2_MA1640.2 9 bp overlap
Motif DE_48h DE_48h-MEIS2_MA1640.2 9 bp overlap
MGA::EVX1 2 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
NR1I2 2 datasets
Motif DE_36h DE_36h-NR1I2_MA1533.2 15 bp overlap
Motif DE_48h DE_48h-NR1I2_MA1533.2 15 bp overlap
ONECUT1 2 datasets
Motif DE_36h DE_36h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_48h DE_48h-ONECUT1_MA0679.3 9 bp overlap
ONECUT3 2 datasets
Motif DE_36h DE_36h-ONECUT3_MA0757.2 12 bp overlap
Motif DE_48h DE_48h-ONECUT3_MA0757.2 12 bp overlap
PBX1 1 dataset
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
PBX2 4 datasets
Motif DE_36h DE_36h-PBX2_MA1113.3 9 bp overlap
Motif DE_36h DE_36h-PBX2_MA1113.3 9 bp overlap
Motif DE_48h DE_48h-PBX2_MA1113.3 9 bp overlap
Motif DE_48h DE_48h-PBX2_MA1113.3 9 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 231 bp overlap
Pax7 2 datasets
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 350 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 247 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 97 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 231 bp overlap
RARB 2 datasets
Motif DE_36h DE_36h-RARB_MA1552.2 13 bp overlap
Motif DE_48h DE_48h-RARB_MA1552.2 13 bp overlap
RXRA::VDR 2 datasets
Motif DE_36h DE_36h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_48h DE_48h-RXRAVDR_MA0074.1 15 bp overlap
SMAD2 3 datasets
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 177 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 377 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 377 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 377 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 377 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 377 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 377 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 377 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 377 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 183 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 101 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 281 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 377 bp overlap
SRY 1 dataset
Motif DE_36h DE_36h-SRY_MA0084.2 7 bp overlap
Sox17 2 datasets
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Sox7 2 datasets
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 181 bp overlap
TCF7 2 datasets
Motif DE_36h DE_36h-TCF7_MA0769.3 7 bp overlap
Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap
TCF7L2 2 datasets
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 2 datasets
Motif DE_36h DE_36h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_48h DE_48h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 2 datasets
Motif DE_36h DE_36h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_48h DE_48h-TFAP2C_MA0814.3 9 bp overlap
THRB 2 datasets
Motif DE_36h DE_36h-THRB_MA1575.2 17 bp overlap
Motif DE_48h DE_48h-THRB_MA1575.2 17 bp overlap
Wt1 2 datasets
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
ZBTB16 1 dataset
ChIP KG-1_shEZH2 GSE109619.ZBTB16.KG-1_shEZH2 217 bp overlap
ZIM3 1 dataset
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
ZNF16 2 datasets
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
ZNF528 1 dataset
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
ZNF549 2 datasets
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
ZNF75A 2 datasets
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
Zfp961 2 datasets
Motif DE_36h DE_36h-Zfp961_MA2126.1 8 bp overlap
Motif DE_48h DE_48h-Zfp961_MA2126.1 8 bp overlap
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