chr1 : 108,947,887 – 108,948,155

268 bp 54 TFs 1 linked gene

This 268 bp open chromatin element is linked to CLCC1 and is bound by 54 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
CLCC1		3.9 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

54 transcription factors

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 263 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 128 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 129 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 71 bp overlap

BRCA1 1 dataset

ChIP MCF-10A GSE40591.BRCA1.MCF-10A 72 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 121 bp overlap

CHD7 1 dataset

ChIP H1 ENCFF126NLU 268 bp overlap

CREB1 1 dataset

ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 200 bp overlap

CTCF 1 dataset

ChIP GSC23 GSE139416.CTCF.GSC23 164 bp overlap

E2F6 1 dataset

Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap

ERG 1 dataset

ChIP Jurkat GSE49091.ERG.Jurkat 189 bp overlap

FOXD2 1 dataset

Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap

FOXD3 1 dataset

Motif ES_0h ES_0h-FOXD3_MA0041.3 14 bp overlap

FOXH1 1 dataset

Motif ES_0h ES_0h-FOXH1_MA0479.2 8 bp overlap

FOXK1 1 dataset

ChIP WTC11 ENCFF875IGU 242 bp overlap

FOXL2 1 dataset

ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 115 bp overlap

GATA3 1 dataset

ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 63 bp overlap

HOXB13 1 dataset

ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 184 bp overlap

IRF3 1 dataset

Motif ES_0h ES_0h-IRF3_MA1418.2 17 bp overlap

IRF4 1 dataset

Motif ES_0h ES_0h-IRF4_MA1419.2 14 bp overlap

IRF7 1 dataset

Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap

IRF8 1 dataset

Motif ES_0h ES_0h-IRF8_MA0652.2 13 bp overlap

IRF9 1 dataset

Motif ES_0h ES_0h-IRF9_MA0653.1 15 bp overlap

Irf1 1 dataset

Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap

MAFB 1 dataset

ChIP islet ERP004003.MAFB.islet 268 bp overlap

MAX 1 dataset

ChIP WTC11 ENCFF223QFY 268 bp overlap

NANOG 8 datasets

ChIP GM23338 ENCFF065NZG 244 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 186 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 268 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 268 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 268 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 268 bp overlap

ChIP hESC GSE20650.NANOG.hESC 246 bp overlap

ChIP hESC GSE18292.NANOG.hESC 113 bp overlap

NEUROG2 2 datasets

ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 244 bp overlap

ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 192 bp overlap

NKX3-1 1 dataset

ChIP islet ERP004003.NKX3-1.islet 62 bp overlap

POLR2A 1 dataset

ChIP GM23338 ENCFF450WCS 268 bp overlap

POU5F1 8 datasets

ChIP GM23338 ENCFF333SNB 233 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 268 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 125 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 231 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 160 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 268 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 268 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 107 bp overlap

RUNX1 1 dataset

ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 223 bp overlap

SMAD2-3 3 datasets

ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 139 bp overlap

ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 268 bp overlap

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 268 bp overlap

SMAD2_3 1 dataset

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 246 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 143 bp overlap

SOX10 1 dataset

Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 268 bp overlap

SOX4 1 dataset

Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap

STAT1::STAT2 1 dataset

Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap

Sox11 1 dataset

Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap

Sox5 1 dataset

Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap

Sox6 1 dataset

Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap

Stat2 1 dataset

Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap

TBP 4 datasets

ChIP hESC GSE122298.TBP.hESC 168 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 199 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 231 bp overlap

ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 268 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 176 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 224 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 268 bp overlap

USF1 2 datasets

ChIP WTC11 ENCFF699QGS 268 bp overlap

ChIP WTC11 ENCFF699QGS 215 bp overlap

ZIM3 1 dataset

Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap

ZNF24 2 datasets

ChIP K-562 ENCSR117WTM.ZNF24.K-562 188 bp overlap

ChIP K562 ENCFF497GLV 243 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 198 bp overlap

ZNF558 1 dataset

Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap