chr6 : 28,927,792 28,928,410
618 bp 33 TFs 1 linked gene
This 618 bp open chromatin element is linked to TRIM27 and is bound by 33 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
TRIM27 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:28,922,792 – 28,933,410
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_Veh GSE125245.AR.VCaP_Veh 160 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 318 bp overlap
ChIP K562 ENCFF673OEZ 360 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 352 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 117 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 512 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 609 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 593 bp overlap
ChIP DE DE-FOXA2-2 618 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 495 bp overlap
FOXJ2 1 dataset
ChIP K562 ENCFF457GZC 326 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 602 bp overlap
ChIP DE DE-GATA4-2 618 bp overlap
ChIP foregut GSE117136.GATA4.foregut 390 bp overlap
ChIP foregut GSE117136.GATA4.foregut 76 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 552 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 618 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 618 bp overlap
ChIP DE DE-GATA6-2 618 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 181 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 589 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 278 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 592 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 589 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 283 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 181 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 618 bp overlap
ChIP foregut GSE117136.GATA6.foregut 470 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 593 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 618 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 618 bp overlap
GTF2F1 1 dataset
ChIP K562 ENCFF485ALN 417 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 293 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 61 bp overlap
JUN 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 53 bp overlap
JUNB 3 datasets
ChIP K-562 ENCSR795IYP.JUNB.K-562 77 bp overlap
ChIP K562 ENCFF785CFE 197 bp overlap
ChIP hESC ENCSR917MAH.JUNB.hESC 74 bp overlap
JUND 1 dataset
ChIP K562 ENCFF336RCR 360 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 289 bp overlap
ChIP K562 ENCFF320EQC 454 bp overlap
MAX 1 dataset
ChIP K562 ENCFF524IJO 355 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 211 bp overlap
ChIP K562 ENCFF320GSD 381 bp overlap
MYC 4 datasets
ChIP K-562 ENCSR000EZU.MYC.K-562 208 bp overlap
ChIP K-562 ENCSR000EGS.MYC.K-562 162 bp overlap
ChIP K-562 ENCSR000EGJ.MYC.K-562 114 bp overlap
ChIP K562 ENCFF988ZRU 381 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 233 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 181 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 342 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 306 bp overlap
ChIP K562 ENCFF236IUS 457 bp overlap
RFX1 4 datasets
ChIP K-562 ENCSR041AXL.RFX1.K-562 379 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 303 bp overlap
ChIP K562 ENCFF809XVG 177 bp overlap
ChIP K562 ENCFF809XVG 281 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 304 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 565 bp overlap
TBP 6 datasets
ChIP hESC GSE122298.TBP.hESC 64 bp overlap
ChIP hESC GSE122298.TBP.hESC 419 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 142 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 194 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 94 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 421 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 296 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 333 bp overlap
USF1 1 dataset
ChIP K-562 ENCSR000BKT.USF1.K-562 145 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 287 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 313 bp overlap
ZEB2 5 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 473 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 303 bp overlap
ChIP K562 ENCFF795CMH 477 bp overlap
ChIP K562 ENCFF795CMH 413 bp overlap
ChIP K562 ENCFF975RXS 461 bp overlap