Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

35 transcription factors

BCL11A 2 datasets

ChIP H1 ENCFF836SSR 177 bp overlap

ChIP WA01 ENCSR000BMJ.BCL11A.WA01 167 bp overlap

BRD4 1 dataset

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 189 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 388 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 205 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 399 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF018MKA 456 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 378 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 359 bp overlap

ChIP DE DE-FOXA2-2 376 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 497 bp overlap

ChIP DE DE-GATA4-2 498 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 504 bp overlap

ChIP DE DE-GATA6-2 571 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 585 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 612 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 552 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 589 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 659 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 659 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 426 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 385 bp overlap

GLIS1 1 dataset

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 441 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 522 bp overlap

JUN 5 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 564 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 567 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 424 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 277 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 648 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 79 bp overlap

MXI1 1 dataset

ChIP neural ENCSR934NHU.MXI1.neural 247 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 248 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 247 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 189 bp overlap

ChIP hESC GSE18292.NANOG.hESC 160 bp overlap

NEUROD1 2 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 560 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 431 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 194 bp overlap

PHOX2B 1 dataset

ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 192 bp overlap

POU5F1 3 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 285 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 152 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 395 bp overlap

RARA 3 datasets

ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 198 bp overlap

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 203 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 363 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 659 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 659 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 659 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 449 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 623 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 659 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 562 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 424 bp overlap

SMARCA4 3 datasets

ChIP NSC GSE125033.SMARCA4.NSC 484 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 230 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 145 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 259 bp overlap

SMARCC1 3 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 520 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 419 bp overlap

ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 335 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 264 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 368 bp overlap

SOX2 4 datasets

ChIP HNSC GSE69479.SOX2.HNSC 304 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 221 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 254 bp overlap

ChIP hESC GSE18292.SOX2.hESC 99 bp overlap

SOX21 1 dataset

ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 477 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 217 bp overlap

TEAD4 1 dataset

ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 219 bp overlap

ZNF283 1 dataset

ChIP HEK293T GSE78099.ZNF283.HEK293T 157 bp overlap

ZNF398 1 dataset

ChIP BG01V GSE133630.ZNF398.BG01V 175 bp overlap

Gene	Dist. to TSS	Distance	Link type
CTNNA1	209.4 kb	Distal	Multiome
SIL1	235.4 kb	Distal	Multiome
SNHG4	311.2 kb	Distal	Multiome+HiCAR
MATR3	330.8 kb	Distal	Multiome+HiCAR

Genome Browser