chr1 : 98,260,956 – 98,261,178
222 bp 31 TFs 0 linked genes
This 222 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:98,255,956 – 98,266,178
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 152 bp overlap
BRD4 4 datasets
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 164 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 185 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 153 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 172 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CTCF 148 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 160 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 196 bp overlap
ChIP A673 ENCFF123WOM 222 bp overlap
ChIP AG10803 ENCFF549AQK 222 bp overlap
ChIP BE2C ENCFF757SRF 222 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 160 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 155 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DND-41 ENCFF913MRA 222 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 153 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 158 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 161 bp overlap
ChIP GM12864 ENCFF357DQE 222 bp overlap
ChIP GM12865 ENCFF067GFI 217 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 157 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 148 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 136 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 115 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 168 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 155 bp overlap
ChIP GM12874 ENCFF942MTD 222 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 167 bp overlap
ChIP GM23338 ENCFF531QOI 222 bp overlap
ChIP GM23338 ENCFF772DML 181 bp overlap
ChIP GM23338 ENCFF832KWE 222 bp overlap
ChIP GM23338 ENCFF832KWE 222 bp overlap
ChIP H1 ENCFF414GZI 155 bp overlap
ChIP H1 ENCFF764RHO 217 bp overlap
ChIP H54 ENCFF255TVO 177 bp overlap
ChIP H9 ENCFF152GTF 186 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 157 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 180 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 204 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 171 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 198 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 166 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 140 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 124 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 207 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 198 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 135 bp overlap
ChIP HCT116 ENCFF003KHP 222 bp overlap
ChIP HCT116 ENCFF209YMI 213 bp overlap
ChIP HEC-1-B GSE139679.CTCF.HEC-1-B 204 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 126 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.CTCF.HEC-1-B_FFRR-insertion 124 bp overlap
ChIP HEC-1-B_FFRR-mutation GSE140868.CTCF.HEC-1-B_FFRR-mutation 105 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 84 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 162 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 170 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 122 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 147 bp overlap
ChIP HFFc6 ENCFF005CJI 222 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 124 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 150 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 148 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 160 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 145 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 144 bp overlap
ChIP HeLa-S3 ENCFF565UFR 154 bp overlap
ChIP HeLa-S3 ENCFF626XQK 195 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 161 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 129 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 106 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 197 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 187 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 165 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 192 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 202 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 95 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 79 bp overlap
ChIP HepG2 ENCFF127KUP 191 bp overlap
ChIP HepG2 ENCFF194VBQ 222 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 158 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 99 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 101 bp overlap
ChIP KMS-11 ENCFF853JKX 222 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 148 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 121 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 173 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 222 bp overlap
ChIP Loucy ENCFF359TVQ 222 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 211 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 118 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 136 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 133 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 178 bp overlap
ChIP PC-3 ENCFF487TUI 222 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 183 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 201 bp overlap
ChIP RWPE2 ENCFF911IEE 222 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 125 bp overlap
ChIP SK-N-SH ENCFF731NJX 215 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 127 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 193 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 108 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 171 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 147 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 164 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 153 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 171 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 104 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 194 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 139 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 120 bp overlap
ChIP VU-SCC-147 GSE143026.CTCF.VU-SCC-147 132 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 97 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 123 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 222 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 216 bp overlap
ChIP chondrocyte ENCFF134ORZ 222 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 168 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 161 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF457ZGY 222 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 222 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 222 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 222 bp overlap
ChIP endodermal cell ENCFF471YCZ 210 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 159 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 202 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 176 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 161 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLW.CTCF.endothelial_umbilical-vein 134 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 222 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 148 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 162 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 134 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 222 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 160 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 119 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 171 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 159 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 156 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 159 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 166 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 174 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 157 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 222 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 141 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 222 bp overlap
ChIP neural progenitor cell ENCFF420RBO 222 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 160 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 150 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 148 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 182 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 222 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 183 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXA1 1 dataset
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 60 bp overlap
FOXA2 1 dataset
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
JUN 1 dataset
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 79 bp overlap
MYF6 1 dataset
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
Nr1h3::Rxra 1 dataset
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 202 bp overlap
ChIP H1 ENCFF967OJF 182 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 126 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 100 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 121 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 113 bp overlap
ChIP Ishikawa ENCFF570JVV 194 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 151 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 149 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 156 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 141 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 168 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 143 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 131 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 136 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 129 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 108 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 180 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 176 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 123 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 148 bp overlap
ZNF211 1 dataset
Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 95 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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