chr5 : 122,570,999 – 122,571,665

666 bp 64 TFs 0 linked genes

This 666 bp open chromatin element has no linked target genes and is bound by 64 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

64 transcription factors

AR 1 dataset

ChIP LNCaP_DHT_Bag-1L-CMut GSE89938.AR.LNCaP_DHT_Bag-1L-CMut 141 bp overlap

ARNTL 1 dataset

ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 209 bp overlap

Arx 1 dataset

Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

DUXA 1 dataset

Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

EN2 1 dataset

Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 231 bp overlap

EP300 1 dataset

ChIP neural ENCSR843ZUP.EP300.neural 139 bp overlap

ERF::HOXB13 1 dataset

Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap

ESR1 1 dataset

ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap

ETV2::DRGX 1 dataset

Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap

ETV2::HOXB13 1 dataset

Motif DE_12h DE_12h-ETV2HOXB13_MA1943.2 13 bp overlap

ETV5::DRGX 1 dataset

Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap

FOXA1 1 dataset

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 216 bp overlap

GATA6 2 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 401 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 501 bp overlap

GBX1 1 dataset

Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

Hmx1 1 dataset

Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap

Hmx3 1 dataset

Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap

IRF2 1 dataset

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

LBX1 1 dataset

Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

LHX9 1 dataset

Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap

MED1 1 dataset

ChIP LNCaP_DHTTHZ1 GSE125245.MED1.LNCaP_DHTTHZ1 128 bp overlap

MED26 1 dataset

ChIP HEK293T GSE121024.MED26.HEK293T 283 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 368 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 567 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 307 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 237 bp overlap

ChIP hESC GSE18292.NANOG.hESC 184 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

PHF19 2 datasets

ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 367 bp overlap

ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 302 bp overlap

PHOX2A 1 dataset

Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 84 bp overlap

POU5F1 7 datasets

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 381 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 354 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 545 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 161 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 405 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap

PPARG 1 dataset

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

PROP1 1 dataset

Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap

PRRX2 1 dataset

Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RELA 1 dataset

ChIP KB_IL GSE52469.RELA.KB_IL 111 bp overlap

REST 1 dataset

ChIP hippocampus GSE144226.REST.hippocampus 148 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 281 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 325 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 254 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 172 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 336 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 465 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 184 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 297 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 395 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 330 bp overlap

VENTX 1 dataset

Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap

Yy1 1 dataset

Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap

ZBTB6 1 dataset

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

ZFP57 3 datasets

Motif DE_12h DE_12h-ZFP57_MA1583.2 7 bp overlap

ChIP hESC GSE115387.ZFP57.hESC 501 bp overlap

ZNF449 1 dataset

Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap

ZNF547 1 dataset

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap

ZNF677 1 dataset

Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap