chr5 : 95,447,232 95,447,806
574 bp 25 TFs 1 linked gene
This 574 bp open chromatin element is linked to RTRAFP2 and is bound by 25 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RTRAFP2 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:95,442,232 – 95,452,806
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
25 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 481 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 64 bp overlap
ChIP hESC GSE33281.BRD4.hESC 52 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 97 bp overlap
CRY1 3 datasets
ChIP U2OS GSE130602.CRY1.U2OS 384 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 382 bp overlap
ChIP U2OS_cordycepin GSE130506.CRY1.U2OS_cordycepin 509 bp overlap
CTCF 2 datasets
ChIP MCF-7 ENCFF844STM 120 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 67 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 73 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 413 bp overlap
ChIP DE DE-FOXA2-2 508 bp overlap
FOXL2 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 175 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 302 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 328 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 108 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 545 bp overlap
ChIP DE DE-GATA4-2 502 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 272 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 303 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 390 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 332 bp overlap
KDM5B 1 dataset
ChIP SUM185 GSE46055.KDM5B.SUM185 101 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 156 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 60 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 213 bp overlap
PHF19 2 datasets
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 224 bp overlap
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 228 bp overlap
RAD21 1 dataset
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 471 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 88 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 256 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 175 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 449 bp overlap
YY1 3 datasets
ChIP K-562 ENCSR000EWF.YY1.K-562 111 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 178 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 104 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 532 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 203 bp overlap