chr5 : 3,598,317 3,598,518
201 bp 27 TFs 2 linked genes
This 201 bp open chromatin element is linked to ENSG00000259603 and IRX1 and is bound by 27 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000259603 1.7 kb Proximal Proximity
IRX1 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:3,593,317 – 3,603,518
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 124 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 184 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 184 bp overlap
CBX7 3 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 201 bp overlap
ChIP hESC GSE133412.CBX7.hESC 201 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 201 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 91 bp overlap
CTCF 4 datasets
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 53 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 159 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 201 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 88 bp overlap
EZH2 5 datasets
ChIP GM23248 ENCFF506FWX 201 bp overlap
ChIP GM23338 ENCFF613YON 201 bp overlap
ChIP H1 ENCFF232NZA 201 bp overlap
ChIP neural progenitor cell ENCFF018MKA 201 bp overlap
ChIP neural progenitor cell ENCFF472NFV 201 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 201 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 201 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 201 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 201 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 201 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 135 bp overlap
JARID2 1 dataset
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 201 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 201 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 201 bp overlap
ONECUT1 4 datasets
ChIP H9 ERP004206.ONECUT1.H9 192 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 157 bp overlap
ChIP HepG2 ENCFF243FIR 196 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 201 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 201 bp overlap
POLR2A 3 datasets
ChIP PFSK-1 ENCFF576NIT 201 bp overlap
ChIP neural cell ENCFF604SPB 201 bp overlap
ChIP neural cell ENCFF604SPB 65 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 117 bp overlap
SIN3A 1 dataset
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 151 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 201 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 101 bp overlap
SMARCC1 2 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 97 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 105 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 52 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 201 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 176 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 201 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 143 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 66 bp overlap