chr4 : 170,230,365 – 170,231,741

1,376 bp 91 TFs 1 linked gene

This 1.4 kb open chromatin element is linked to LINC01612 and is bound by 91 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC01612		3.8 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

91 transcription factors

ARNT::HIF1A 2 datasets

Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap

Motif DE_72h DE_72h-ARNTHIF1A_MA0259.2 5 bp overlap

Arid3a 1 dataset

Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap

BARX1 1 dataset

Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap

BCL6 1 dataset

Motif DE_60h DE_60h-BCL6_MA0463.3 13 bp overlap

BCL6B 1 dataset

Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap

BSX 1 dataset

Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap

CEBPA 1 dataset

Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap

CEBPD 1 dataset

Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap

DLX1 1 dataset

Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap

DMRTA2 1 dataset

Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap

Dlx2 1 dataset

Motif DE_60h DE_60h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_60h DE_60h-Dlx5_MA1476.3 8 bp overlap

ERF::FOXI1 1 dataset

Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap

ETV5::FOXI1 1 dataset

Motif DE_60h DE_60h-ETV5FOXI1_MA1946.2 12 bp overlap

ETV5::HOXA2 1 dataset

Motif DE_60h DE_60h-ETV5HOXA2_MA1948.2 12 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap

FIGLA 1 dataset

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 1131 bp overlap

ChIP DE DE-FOXA2-2 670 bp overlap

ChIP DE DE-FOXA2-2 265 bp overlap

FOXC2 1 dataset

Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap

FOXD2 1 dataset

Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap

FOXD3 1 dataset

Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap

GATA1::TAL1 2 datasets

Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap

Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap

GATA4 5 datasets

ChIP DE DE-GATA4-1 646 bp overlap

ChIP DE DE-GATA4-1 324 bp overlap

ChIP DE DE-GATA4-2 914 bp overlap

ChIP DE DE-GATA4-2 350 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 608 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 579 bp overlap

ChIP DE DE-GATA6-1 332 bp overlap

ChIP DE DE-GATA6-2 1135 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 494 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 668 bp overlap

GBX2 1 dataset

Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap

GLIS1 2 datasets

Motif DE_60h DE_60h-GLIS1_MA0735.2 15 bp overlap

Motif DE_72h DE_72h-GLIS1_MA0735.2 15 bp overlap

HESX1 1 dataset

Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap

HLF 1 dataset

Motif DE_60h DE_60h-HLF_MA0043.4 9 bp overlap

HNF4A 1 dataset

Motif DE_60h DE_60h-HNF4A_MA0114.5 9 bp overlap

HNF4G 1 dataset

Motif DE_60h DE_60h-HNF4G_MA0484.3 9 bp overlap

HOXA10 1 dataset

Motif DE_60h DE_60h-HOXA10_MA0899.2 9 bp overlap

HOXA6 1 dataset

Motif DE_60h DE_60h-HOXA6_MA1497.2 7 bp overlap

HOXA7 1 dataset

Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap

HOXB6 1 dataset

Motif DE_60h DE_60h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_60h DE_60h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_60h DE_60h-HOXB8_MA1502.2 7 bp overlap

HOXD8 1 dataset

Motif DE_60h DE_60h-HOXD8_MA0910.3 7 bp overlap

HOXD9 1 dataset

Motif DE_60h DE_60h-HOXD9_MA0913.3 9 bp overlap

Hmx1 1 dataset

Motif DE_60h DE_60h-Hmx1_MA0896.2 9 bp overlap

Hmx2 1 dataset

Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap

IKZF1 1 dataset

Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap

IKZF2 1 dataset

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

Irf1 1 dataset

Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap

LBX2 1 dataset

Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap

MSX1 1 dataset

Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap

NR1D1 1 dataset

Motif DE_60h DE_60h-NR1D1_MA1531.2 14 bp overlap

NR1D2 1 dataset

Motif DE_60h DE_60h-NR1D2_MA1532.2 15 bp overlap

Nobox 1 dataset

Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap

Nr5A2 1 dataset

Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap

PHOX2A 1 dataset

Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap

RAX 1 dataset

Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap

RBPJ 1 dataset

Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap

RFX1 1 dataset

Motif DE_60h DE_60h-RFX1_MA0509.3 16 bp overlap

RFX2 1 dataset

Motif DE_60h DE_60h-RFX2_MA0600.3 14 bp overlap

RFX5 1 dataset

Motif DE_60h DE_60h-RFX5_MA0510.3 14 bp overlap

RORA 1 dataset

Motif DE_60h DE_60h-RORA_MA0072.2 11 bp overlap

SMAD2 2 datasets

Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap

ChIP endoderm GSE29422.SMAD2.endoderm 207 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 793 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 322 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 681 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 229 bp overlap

SMARCA4 1 dataset

ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 257 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 315 bp overlap

SPI1 1 dataset

ChIP HL-60 ENCFF645GBT 271 bp overlap

SPIB 1 dataset

ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 160 bp overlap

STAT1 1 dataset

Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap

Spz1 1 dataset

Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap

Stat4 1 dataset

Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap

Stat5a 1 dataset

Motif DE_60h DE_60h-Stat5a_MA1624.2 9 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_60h DE_60h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap

Stat6 1 dataset

Motif DE_60h DE_60h-Stat6_MA0520.2 10 bp overlap

TCF4 1 dataset

Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap

Thap11 1 dataset

Motif DE_60h DE_60h-Thap11_MA1573.2 14 bp overlap

Yy1 1 dataset

Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap

ZBTB12 1 dataset

Motif DE_60h DE_60h-ZBTB12_MA1649.2 7 bp overlap

ZEB1 1 dataset

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZNF136 1 dataset

Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap

ZNF143 1 dataset

Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap

ZNF257 1 dataset

Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap

ZNF281 1 dataset

Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap

ZNF320 2 datasets

Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap

Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap

ZNF354C 1 dataset

Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap

ZNF582 2 datasets

Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap

ZSCAN31 1 dataset

Motif DE_60h DE_60h-ZSCAN31_MA1722.2 18 bp overlap