chr4 : 133,474,436 – 133,474,979

543 bp 45 TFs 0 linked genes

This 543 bp open chromatin element has no linked target genes and is bound by 45 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

45 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 243 bp overlap

BRF1 1 dataset

ChIP H9_Activin GSE94418.BRF1.H9_Activin 149 bp overlap

CEBPB 1 dataset

ChIP WA01 ENCSR000EBV.CEBPB.WA01 182 bp overlap

E2F1 1 dataset

Motif DE_12h DE_12h-E2F1_MA0024.3 12 bp overlap

ESR1 1 dataset

ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 131 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

FEZF2 1 dataset

Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap

FOXD3 1 dataset

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

GATA1::TAL1 1 dataset

Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap

GATA2 1 dataset

Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap

GATA4 1 dataset

Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap

GATA6 8 datasets

Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 534 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 509 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 543 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 392 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 543 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 543 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 316 bp overlap

Gata3 1 dataset

Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap

HOXC11 1 dataset

Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap

HOXC12 1 dataset

Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap

HOXD11 1 dataset

Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

Hoxa11 1 dataset

Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 409 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 324 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 393 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 497 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 516 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 354 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 521 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 506 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 453 bp overlap

ChIP hESC GSE18292.NANOG.hESC 111 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 239 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU5F1 4 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 543 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 394 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 339 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAD21 1 dataset

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 268 bp overlap

RARA 2 datasets

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 359 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 340 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 463 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 490 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 387 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 417 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 454 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 259 bp overlap

SMARCA4 6 datasets

ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 347 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 347 bp overlap

ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 399 bp overlap

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 270 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 455 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 374 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 217 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 398 bp overlap

SMARCC1 7 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 454 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 287 bp overlap

ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 216 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 325 bp overlap

ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 254 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 371 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 326 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 198 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 446 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 246 bp overlap

TCF7 1 dataset

Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 1 dataset

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

TRPS1 1 dataset

Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap

ZNF136 1 dataset

Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap

ZNF281 1 dataset

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

ZNF410 1 dataset

Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap

ZNF770 1 dataset

Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap