chr4 : 124,902,257 – 124,902,659
402 bp 44 TFs 0 linked genes
This 402 bp open chromatin element has no linked target genes and is bound by 44 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:124,897,257 – 124,907,659
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 356 bp overlap
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 402 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 402 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 392 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 119 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 165 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 237 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTC2 1 dataset
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 42 datasets
ChIP MCF-7 GSE41561.ESR1.MCF-7 356 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 352 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 254 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 248 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 256 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 313 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 284 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 346 bp overlap
ChIP MCF-7_E2 GSE72249.ESR1.MCF-7_E2 145 bp overlap
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 349 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 345 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 124 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 286 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 304 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 135 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 180 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 272 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 380 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 375 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 308 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 322 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 145 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 243 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 345 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 104 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 357 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 250 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 373 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 130 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 348 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 402 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 328 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 225 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 303 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 333 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 163 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 153 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 241 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 243 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 315 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 275 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 372 bp overlap
ESR1_Y537N 1 dataset
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 164 bp overlap
ESR1_Y537S 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 284 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 243 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 331 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 117 bp overlap
FOXA1 58 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 129 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 370 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 348 bp overlap
ChIP MCF-7 ENCFF465LTH 155 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 402 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 402 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 402 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 372 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 314 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 320 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 326 bp overlap
ChIP MCF-7 GSE128445.FOXA1.MCF-7 225 bp overlap
ChIP MCF-7 GSE95302.FOXA1.MCF-7 287 bp overlap
ChIP MCF-7 GSE124667.FOXA1.MCF-7 229 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 180 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 174 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 343 bp overlap
ChIP MCF-7_1118 GSE124667.FOXA1.MCF-7_1118 226 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 202 bp overlap
ChIP MCF-7_CTCF2_FOXA1 GSE124667.FOXA1.MCF-7_CTCF2_FOXA1 205 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 402 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 292 bp overlap
ChIP MCF-7_DSG GSE114737.FOXA1.MCF-7_DSG 266 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 402 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 309 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 290 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 373 bp overlap
ChIP MCF-7_ESR2 GSE124667.FOXA1.MCF-7_ESR2 211 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 371 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 370 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 278 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 384 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 402 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 366 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 334 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 350 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 392 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 298 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 160 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 295 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 328 bp overlap
ChIP MCF-7_shCTRL GSE132432.FOXA1.MCF-7_shCTRL 392 bp overlap
ChIP MCF-7_siFEN1 GSE95302.FOXA1.MCF-7_siFEN1 300 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 398 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 402 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 212 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 219 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 319 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 294 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 229 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 347 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 179 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 286 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 267 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 247 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 182 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 402 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 297 bp overlap
FOXA2 9 datasets
ChIP DE DE-FOXA2-1 387 bp overlap
ChIP DE DE-FOXA2-2 328 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 258 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 347 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 378 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 352 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 358 bp overlap
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 344 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 402 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 359 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 330 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 339 bp overlap
GATA4 2 datasets
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 402 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 402 bp overlap
GATA6 2 datasets
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 358 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 402 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 251 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 382 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 402 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 153 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 155 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 338 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 402 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 356 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 287 bp overlap
NR2F2 2 datasets
ChIP MCF-7 ENCFF329FZB 249 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 371 bp overlap
NR3C1 1 dataset
ChIP IMR-90 ERP007093.NR3C1.IMR-90 197 bp overlap
NR3C1_mut 2 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1_mut.MCF-7_E2_Dex 282 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 296 bp overlap
NRIP1 3 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 197 bp overlap
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 310 bp overlap
ONECUT1 3 datasets
ChIP H9 ERP004206.ONECUT1.H9 198 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 92 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 402 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 284 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 402 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 402 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 402 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 279 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 190 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 91 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 347 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 94 bp overlap
SMARCA4 6 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 186 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 241 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 375 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 264 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 309 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 267 bp overlap
SMARCB1 4 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 297 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 345 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 269 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 221 bp overlap
SMARCC1 3 datasets
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 284 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 277 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 382 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 172 bp overlap
TEAD4 2 datasets
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 129 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 402 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 320 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCSR465XQW.ZNF217.MCF-7 307 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
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