chr4 : 120,918,201 120,918,485
284 bp 30 TFs 1 linked gene
This 284 bp open chromatin element is linked to PRDM5 and is bound by 30 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRDM5 4.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:120,913,201 – 120,923,485
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 188 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 173 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 277 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 190 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 149 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D21 GSE139377.ERG.aortic-endothelial-cell_D21 207 bp overlap
ESR1 5 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 172 bp overlap
ChIP MCF-7_EtOH GSE136673.ESR1.MCF-7_EtOH 220 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 177 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 172 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 185 bp overlap
ESRRA 3 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 257 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 125 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 284 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 206 bp overlap
FOXA1 27 datasets
ChIP LAPC-4_CST_V5 GSE123618.FOXA1.LAPC-4_CST_V5 219 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 284 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 261 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 175 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 181 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 103 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 181 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 248 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 284 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 173 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 233 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 184 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 269 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 284 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 284 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 277 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 261 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 243 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 284 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 134 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 149 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 247 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 284 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 277 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 284 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 235 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 281 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 112 bp overlap
ChIP DE DE-FOXA2-1 284 bp overlap
ChIP DE DE-FOXA2-2 284 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 284 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 217 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 273 bp overlap
GATA3 8 datasets
ChIP MCF-7 ENCFF352QVM 284 bp overlap
ChIP MCF-7 ENCFF437NQS 284 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 267 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 270 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 282 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 265 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 167 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 245 bp overlap
GATA4 8 datasets
ChIP A-549 GSE85002.GATA4.A-549 162 bp overlap
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 264 bp overlap
ChIP DE DE-GATA4-1 284 bp overlap
ChIP DE DE-GATA4-2 284 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 284 bp overlap
ChIP foregut GSE117136.GATA4.foregut 173 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 284 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 284 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 284 bp overlap
ChIP DE DE-GATA6-2 284 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 226 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 284 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 284 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 267 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 227 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 226 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 284 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 58 bp overlap
NR3C1 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 177 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF820WZN 284 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 148 bp overlap
RELA 3 datasets
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 271 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 168 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 201 bp overlap
RFX5 4 datasets
ChIP MCF-7 ENCFF983ILY 249 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 162 bp overlap
ChIP SK-N-SH ENCFF755HLO 230 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 235 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 177 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 284 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 284 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 284 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 166 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 162 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 187 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 188 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 141 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 152 bp overlap