chr4 : 101,338,485 – 101,338,734
249 bp 35 TFs 2 linked genes
This 249 bp open chromatin element is linked to PPP3CA and FLJ20021 and is bound by 35 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PPP3CA 8.8 kb Proximal Proximity
FLJ20021 9.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:101,333,485 – 101,343,734
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 154 bp overlap
AR 1 dataset
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 87 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 145 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 249 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 203 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 204 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 249 bp overlap
ARID2 2 datasets
ChIP MCF-7_parental GSE123284.ARID2.MCF-7_parental 64 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ARID2.MCF-7_parental_4-hydroxytamoxifen 75 bp overlap
BRD4 2 datasets
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 160 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 229 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 195 bp overlap
CHD8 1 dataset
ChIP T-47D_R5020_45 GSE62428.CHD8.T-47D_R5020_45 185 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 163 bp overlap
ESR1 15 datasets
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 209 bp overlap
ChIP MCF-7_E2 GSE117941.ESR1.MCF-7_E2 52 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 90 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 134 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 67 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 134 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 143 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 90 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 92 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 150 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 130 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 206 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 115 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 56 bp overlap
ChIP T-47D_R5020 GSE68355.ESR1.T-47D_R5020 183 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 116 bp overlap
FOXA1 25 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 127 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 78 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 69 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 161 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 71 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 187 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 100 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 84 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 111 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 50 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 125 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 61 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 130 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 55 bp overlap
ChIP T-47D_DEX GSE72249.FOXA1.T-47D_DEX 60 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 76 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 126 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 59 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 119 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 125 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 208 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 127 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 249 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 187 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 249 bp overlap
GATA3 7 datasets
ChIP MCF-7 ENCFF352QVM 70 bp overlap
ChIP MCF-7 ENCFF437NQS 140 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 118 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 89 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 77 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 182 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 71 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 88 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 60 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 249 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 249 bp overlap
ChIP DE DE-GATA6-2 249 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 249 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 249 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 249 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 249 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 249 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 249 bp overlap
GRHL2 3 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 176 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 130 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 131 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 249 bp overlap
NR3C1 5 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 75 bp overlap
ChIP MCF-7_DEX GSE72249.NR3C1.MCF-7_DEX 162 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 237 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 249 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 249 bp overlap
PGR 10 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 170 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 164 bp overlap
ChIP T-47D GSE31129.PGR.T-47D 235 bp overlap
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 209 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 249 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 249 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 222 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 249 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 249 bp overlap
ChIP T-47D_progesterone_siCEBPA GSE132649.PGR.T-47D_progesterone_siCEBPA 218 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 249 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 248 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 151 bp overlap
SMARCA4 5 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 249 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 112 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 244 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 115 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 238 bp overlap
SMARCB1 6 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 146 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 249 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 130 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 134 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 249 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 249 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 249 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 61 bp overlap
SMARCE1 1 dataset
ChIP MCF-7 ENCSR431TLD.SMARCE1.MCF-7 143 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 216 bp overlap
STAT3 3 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 80 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 187 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 56 bp overlap
TEAD4 5 datasets
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 83 bp overlap
ChIP MCF-7_ICI GSE125594.TEAD4.MCF-7_ICI 84 bp overlap
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 72 bp overlap
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 99 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 107 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 135 bp overlap
YY1AP1 4 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 142 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 193 bp overlap
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 153 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 159 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 161 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 137 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 241 bp overlap
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