chr4 : 66,569,347 – 66,569,713
366 bp 57 TFs 0 linked genes
This 366 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:66,564,347 – 66,574,713
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 160 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 128 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD4 2 datasets
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 305 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 265 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CTCF 85 datasets
ChIP 22Rv1 ENCFF466OXN 366 bp overlap
ChIP 22Rv1 ENCFF466OXN 366 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 335 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 332 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 289 bp overlap
ChIP C4-2B ENCFF821XVN 366 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 118 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 176 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 234 bp overlap
ChIP GM23338 ENCFF531QOI 325 bp overlap
ChIP GM23338 ENCFF772DML 184 bp overlap
ChIP H1 ENCFF764RHO 245 bp overlap
ChIP H9 ENCFF152GTF 324 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 222 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 213 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 271 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 185 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 176 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 221 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 242 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 164 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 255 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 318 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 163 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 318 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 291 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 165 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 170 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 124 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 230 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 143 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 121 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 143 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 185 bp overlap
ChIP LNCAP ENCFF223HIG 366 bp overlap
ChIP LNCAP ENCFF700QXT 366 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 339 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 180 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 180 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 366 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 179 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 322 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 212 bp overlap
ChIP MCF-7 ENCFF198DQX 187 bp overlap
ChIP MCF-7 ENCFF494VXA 187 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 191 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 114 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 129 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 120 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 127 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 266 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 144 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 203 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 183 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 129 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 161 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 217 bp overlap
ChIP VCaP ENCFF858YQT 366 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 253 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 138 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 142 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 163 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 118 bp overlap
ChIP chondrocyte ENCFF134ORZ 355 bp overlap
ChIP endodermal cell ENCFF471YCZ 348 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 366 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 220 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 205 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 216 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 157 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 131 bp overlap
ChIP keratinocyte ENCFF667ULX 248 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 259 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 187 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 180 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 118 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 243 bp overlap
ChIP neural progenitor cell ENCFF420RBO 316 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 234 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 120 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 177 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 156 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 222 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 320 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EOMES 1 dataset
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 178 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 226 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 176 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 265 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 69 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 78 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 53 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 192 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 226 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX19 1 dataset
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TBXT 1 dataset
Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
ZKSCAN5 1 dataset
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
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