chr3 : 196,085,579 196,086,028
449 bp 37 TFs 1 linked gene
This 449 bp open chromatin element is linked to TFRC and is bound by 37 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
TFRC 3.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:196,080,579 – 196,091,028
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 194 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 110 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 268 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 321 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 375 bp overlap
EVI1 2 datasets
ChIP SKH1 GSE87283.EVI1.SKH1 175 bp overlap
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 164 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 330 bp overlap
ChIP DE DE-FOXA2-2 358 bp overlap
GATA2 1 dataset
ChIP SKH1 GSE87283.GATA2.SKH1 226 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 421 bp overlap
ChIP DE DE-GATA4-2 414 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 382 bp overlap
ChIP DE DE-GATA6-2 427 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 404 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 398 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 371 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 449 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 441 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 421 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 442 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 272 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 330 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 344 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 309 bp overlap
KDM1A 1 dataset
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 244 bp overlap
MED1 2 datasets
ChIP MDA-MB-231_LQ GSE95121.MED1.MDA-MB-231_LQ 211 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.MED1.MDA-MB-231_LQ_45min 254 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 249 bp overlap
NFE2L2 2 datasets
ChIP A-549 ENCSR584GHV.NFE2L2.A-549 76 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.NFE2L2.HAEC_oxpapc_4h 152 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 348 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 260 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 449 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 449 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 449 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 449 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 449 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 449 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 449 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 449 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 249 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 258 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 426 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 241 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 338 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 392 bp overlap
SPI1 8 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 157 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 222 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 217 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 105 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 229 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 239 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 132 bp overlap
SRC 1 dataset
ChIP MDA-MB-231_LQ_45min GSE95121.SRC.MDA-MB-231_LQ_45min 288 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 226 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 449 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 109 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 205 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCFF468FCG 160 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 92 bp overlap