chr3 : 145,094,492 – 145,094,911
419 bp 55 TFs 0 linked genes
This 419 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:145,089,492 – 145,099,911
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 376 bp overlap
Ascl2 2 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD2 1 dataset
ChIP K-562 GSE140325.BRD2.K-562 184 bp overlap
BRD4 1 dataset
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 69 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CIITA 1 dataset
ChIP Raji_AB1 GSE52941.CIITA.Raji_AB1 323 bp overlap
CREB1 19 datasets
ChIP A-549 ENCSR000BRC.CREB1.A-549 173 bp overlap
ChIP A-549 ENCSR000BRA.CREB1.A-549 128 bp overlap
ChIP GM12878 ENCFF870CVH 223 bp overlap
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 227 bp overlap
ChIP GM23338 ENCFF432ZEW 139 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 240 bp overlap
ChIP H1 ENCFF955PMP 231 bp overlap
ChIP Hep-G2 ENCSR000BVL.CREB1.Hep-G2 127 bp overlap
ChIP Ishikawa ENCFF197ISF 315 bp overlap
ChIP Ishikawa ENCSR000BUR.CREB1.Ishikawa 201 bp overlap
ChIP LNCaP GSE63034.CREB1.LNCaP 173 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 332 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 319 bp overlap
ChIP MCF-7 ENCFF341ZEM 219 bp overlap
ChIP MCF-7 ENCFF867SAS 237 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 376 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 298 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.CREB1.MDA-MB-134-VI_FI 247 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 284 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 327 bp overlap
CREM 3 datasets
ChIP GM12878 ENCFF391UGE 174 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 218 bp overlap
ChIP K-562 ENCSR077DKV.CREM.K-562 108 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 60 bp overlap
ESR1_Y537S 1 dataset
ChIP T-47D_E2 GSE94493.ESR1_Y537S.T-47D_E2 70 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 337 bp overlap
FERD3L 2 datasets
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
Motif ES_0h ES_0h-FERD3L_MA1485.1 14 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 286 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 345 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXL2 3 datasets
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 128 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 153 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 226 bp overlap
GATA1::TAL1 3 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif ES_0h ES_0h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 6 datasets
ChIP G296S GSE85628.GATA4.G296S 410 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 410 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 268 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 269 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 409 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 316 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 293 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
JMJD6 1 dataset
ChIP CHP-134 GSE129588.JMJD6.CHP-134 419 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 190 bp overlap
MAFF 2 datasets
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MED1 1 dataset
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 163 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MYB 3 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 166 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 199 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 133 bp overlap
NFYB 1 dataset
ChIP GM12878 ENCFF474DNH 354 bp overlap
NRL 2 datasets
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Motif ES_0h ES_0h-NRL_MA0842.3 12 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA1546.2 14 bp overlap
Prdm4 2 datasets
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RFX5 18 datasets
ChIP A-549 ENCSR064LJN.RFX5.A-549 419 bp overlap
ChIP A549 ENCFF220PEX 395 bp overlap
ChIP GM12878 ENCFF768MIX 256 bp overlap
ChIP GM12878 ENCSR000DZW.RFX5.GM12878 249 bp overlap
ChIP H1 ENCFF605EGG 333 bp overlap
ChIP HeLa-S3 ENCFF703XPB 203 bp overlap
ChIP HeLa-S3 ENCSR000ECX.RFX5.HeLa-S3 316 bp overlap
ChIP Hep-G2 ENCSR000EEA.RFX5.Hep-G2 264 bp overlap
ChIP HepG2 ENCFF065UQI 241 bp overlap
ChIP IMR-90 ENCFF886KPO 206 bp overlap
ChIP IMR-90 ENCSR000EFD.RFX5.IMR-90 403 bp overlap
ChIP K-562 ENCSR000EGO.RFX5.K-562 231 bp overlap
ChIP K562 ENCFF734TCX 330 bp overlap
ChIP MCF-7 ENCFF983ILY 419 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 419 bp overlap
ChIP SK-N-SH ENCFF755HLO 277 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 419 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 419 bp overlap
RFXANK 1 dataset
ChIP HepG2 ENCFF276CBT 234 bp overlap
RFXAP 1 dataset
ChIP Hep-G2 ENCSR524RLU.RFXAP.Hep-G2 145 bp overlap
Rfx6 2 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 211 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 116 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 171 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 238 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 188 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 297 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 94 bp overlap
STAT3 1 dataset
ChIP HepaRG_sodium-oleate GSE89157.STAT3.HepaRG_sodium-oleate 115 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZBTB32 2 datasets
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
Motif ES_0h ES_0h-ZBTB32_MA1580.1 10 bp overlap
ZNF35 2 datasets
Motif DE_12h DE_12h-ZNF35_MA2333.1 7 bp overlap
Motif ES_0h ES_0h-ZNF35_MA2333.1 7 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Huangfu Lab · Publications · Resources · Contact