chr3 : 117,322,970 117,323,143
173 bp 60 TFs 0 linked genes
This 173 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:117,317,970 – 117,328,143
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 150 bp overlap
AR 5 datasets
ChIP A-375 GSE116189.AR.A-375 163 bp overlap
ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 173 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 173 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 149 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 152 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 113 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 109 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 164 bp overlap
EHMT2 4 datasets
ChIP A-549 ENCSR321BJQ.EHMT2.A-549 173 bp overlap
ChIP A549 ENCFF026GWM 173 bp overlap
ChIP HepG2 ENCFF004KYI 173 bp overlap
ChIP K-562 ENCSR175EOM.EHMT2.K-562 173 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 173 bp overlap
FOS 1 dataset
ChIP leiomyoma_PT1063 GSE128230.FOS.leiomyoma_PT1063 82 bp overlap
FOXA1 2 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 95 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 114 bp overlap
GATA4 2 datasets
ChIP foregut GSE117136.GATA4.foregut 173 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 173 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 140 bp overlap
ChIP liver ENCFF354NRH 173 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 173 bp overlap
KDM1A 1 dataset
ChIP SU-DHL-4 GSE119038.KDM1A.SU-DHL-4 173 bp overlap
MAFG::NFE2L1 3 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_24h DE_24h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 3 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 66 bp overlap
ChIP HepG2 ENCFF743ZOF 86 bp overlap
ChIP HepG2 ENCFF767LDG 73 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 173 bp overlap
Mafg 3 datasets
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
Motif DE_24h DE_24h-Mafg_MA0659.4 12 bp overlap
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
NANOG 3 datasets
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 161 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 158 bp overlap
ChIP hESC GSE18292.NANOG.hESC 111 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 51 bp overlap
NFIB 3 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif DE_24h DE_24h-NFIB_MA1643.2 17 bp overlap
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 127 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 115 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 94 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
REST 70 datasets
ChIP A-549 ENCSR000BQP.REST.A-549 173 bp overlap
ChIP A549 ENCFF148AIS 173 bp overlap
ChIP CD4 GSE49570.REST.CD4 173 bp overlap
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
Motif DE_24h DE_24h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
ChIP GM12878 ENCFF235NGC 173 bp overlap
ChIP GM12878 ENCFF943QPB 173 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 173 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 173 bp overlap
ChIP GM23338 ENCFF024TCL 173 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 173 bp overlap
ChIP GP5D GSE51234.REST.GP5D 173 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 173 bp overlap
ChIP H1 ENCFF203SWY 173 bp overlap
ChIP H1 ENCFF429RUE 173 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 173 bp overlap
ChIP HCT116 ENCFF929AYY 115 bp overlap
ChIP HEK293 ENCFF073DOT 173 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 173 bp overlap
ChIP HL-60 ENCFF589LOF 173 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 173 bp overlap
ChIP HeLa-S3 ENCFF911DTC 173 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 173 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 173 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 173 bp overlap
ChIP HepG2 ENCFF122AWR 173 bp overlap
ChIP HepG2 ENCFF800JSL 172 bp overlap
ChIP Ishikawa ENCFF456OHV 173 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 173 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 173 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 173 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 173 bp overlap
ChIP K-562 GSE70482.REST.K-562 173 bp overlap
ChIP K562 ENCFF430APM 103 bp overlap
ChIP K562 ENCFF688UKW 173 bp overlap
ChIP K562 ENCFF758CZL 173 bp overlap
ChIP MCF-7 ENCFF893RRD 173 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 173 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 173 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 173 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 173 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 166 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 173 bp overlap
ChIP PFSK-1 ENCFF668WMP 168 bp overlap
ChIP PFSK-1 ENCFF845VHA 173 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 173 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 173 bp overlap
ChIP Panc1 ENCFF518EEQ 173 bp overlap
ChIP Panc1 ENCFF629OJO 173 bp overlap
ChIP SK-N-SH ENCFF635KBN 173 bp overlap
ChIP SK-N-SH ENCFF861MKH 117 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 173 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 173 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 173 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 173 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 173 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 173 bp overlap
ChIP hepatocyte ERP000395.REST.hepatocyte 173 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 173 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 173 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 173 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 173 bp overlap
ChIP liver ENCFF240FWT 173 bp overlap
ChIP liver ENCFF577AZT 173 bp overlap
ChIP liver ENCSR867WPH.REST.liver 173 bp overlap
ChIP liver ENCSR893QWP.REST.liver 173 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 173 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.REST.metastatic-neuroblastoma_SKNMM 173 bp overlap
ChIP neural ENCSR000BTV.REST.neural 153 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SMARCA4 9 datasets
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 76 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 66 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 166 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 173 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 173 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 173 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 173 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 171 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 171 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 173 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 151 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 140 bp overlap
Six4 1 dataset
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 2 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 158 bp overlap
ChIP A549 ENCFF243FTL 173 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 152 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 146 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 154 bp overlap
ZNF143 2 datasets
ChIP GM12878 ENCSR000DZL.ZNF143.GM12878 103 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 135 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 173 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 132 bp overlap
ZNF547 3 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap