Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

31 transcription factors

BRD3 1 dataset

ChIP H-1_DE GSE126661.BRD3.H-1_DE 388 bp overlap

CLOCK 1 dataset

ChIP BA40_0 GSE96659.CLOCK.BA40_0 151 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 299 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 283 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 338 bp overlap

ChIP DE DE-FOXA2-2 297 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 297 bp overlap

ChIP DE DE-GATA4-2 373 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 295 bp overlap

ChIP DE DE-GATA6-2 440 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 309 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 305 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 465 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 428 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 394 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 442 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 492 bp overlap

HDAC2 2 datasets

ChIP WA01 ENCSR000BNR.HDAC2.WA01 185 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 167 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 253 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 551 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 521 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 507 bp overlap

JUNB 1 dataset

ChIP Karpas-299 GSE151413.JUNB.Karpas-299 255 bp overlap

MED1 1 dataset

ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 216 bp overlap

NANOG 4 datasets

ChIP WA01 ENCSR000BMT.NANOG.WA01 168 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 455 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 301 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 228 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 462 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 465 bp overlap

RELA 1 dataset

ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 139 bp overlap

SMAD2 4 datasets

ChIP endoderm GSE29422.SMAD2.endoderm 291 bp overlap

ChIP hESC GSE29422.SMAD2.hESC 275 bp overlap

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 460 bp overlap

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 462 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 551 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 551 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 551 bp overlap

SMAD2_3 6 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 551 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 551 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 551 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 551 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 551 bp overlap

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 264 bp overlap

SMAD3 4 datasets

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 287 bp overlap

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 261 bp overlap

ChIP endoderm GSE29422.SMAD3.endoderm 266 bp overlap

ChIP hESC GSE29422.SMAD3.hESC 284 bp overlap

SMAD4 2 datasets

ChIP endoderm GSE29422.SMAD4.endoderm 311 bp overlap

ChIP hESC GSE29422.SMAD4.hESC 217 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 191 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 264 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 505 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 225 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 266 bp overlap

TEAD4 1 dataset

ChIP H1 ENCFF778PAX 245 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 299 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 174 bp overlap

ZNF143 2 datasets

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 208 bp overlap

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 317 bp overlap

Gene	Dist. to TSS	Distance	Link type
LIMD1-AS1	15.8 kb	Distal	Multiome
SACM1L	15.8 kb	Distal	Multiome
LIMD1	79.1 kb	Distal	Multiome
SLC6A20	123.1 kb	Distal	Multiome
LZTFL1	168.6 kb	Distal	Multiome
LARS2	284.8 kb	Distal	Multiome

Genome Browser