chr3 : 38,658,747 38,659,115
368 bp 28 TFs 1 linked gene
This 368 bp open chromatin element is linked to SCN5A and is bound by 28 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SCN5A 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:38,653,747 – 38,664,115
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 139 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 117 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 251 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 164 bp overlap
ChIP neural cell ENCFF442QNK 280 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 203 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 109 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 174 bp overlap
EZH2 6 datasets
ChIP THP-1 GSE135024.EZH2.THP-1 57 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 54 bp overlap
ChIP fibroblast of lung ENCFF479BAW 181 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 164 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 61 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 161 bp overlap
GATA2 5 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 125 bp overlap
ChIP SH-SY5Y ENCFF485YIB 290 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 268 bp overlap
ChIP SK-N-SH ENCFF764OZD 353 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 159 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 177 bp overlap
GATA4 10 datasets
ChIP DE DE-GATA4-1 323 bp overlap
ChIP DE DE-GATA4-2 368 bp overlap
ChIP G296S GSE85628.GATA4.G296S 209 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 211 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 246 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 251 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 327 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 203 bp overlap
ChIP foregut GSE117136.GATA4.foregut 342 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 336 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 291 bp overlap
ChIP DE DE-GATA6-2 368 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 324 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 353 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 321 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 368 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 368 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 353 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 351 bp overlap
ChIP foregut GSE117136.GATA6.foregut 298 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 317 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 187 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 350 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 140 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 187 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 123 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 128 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 272 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 295 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 368 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 235 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 301 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 92 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 115 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 152 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 353 bp overlap
TAF1 1 dataset
ChIP neural cell ENCFF468SPD 368 bp overlap
TBX5 3 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 145 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 128 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 152 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 262 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 224 bp overlap
YY1 1 dataset
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 92 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 59 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 134 bp overlap